C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphatidylglycerophosphate synthase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017715 Pgs1 10090 + 11:117986292-118024011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017859 Pgs1-004 117986885-118024011 nonsense_mediated_decay
  ENSMUST00000100185 Pgs1-003 118000795-118023925 nonsense_mediated_decay
  ENSMUST00000132676 Pgs1-001 117986292-118024011 protein_coding
  ENSMUST00000155507 Pgs1-002 118012343-118024011 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017859ENSMUST00000132676ENSMUST00000155507
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017859 11.612±2.75 87.003±41.91 7.893±1.89 15.331±2.96 11.021±1.89 5.451±0.00 5.343±0.30 7.468±0.71 5.386±1.91 16.378±2.60 8.407±0.57 10.085±2.96 14.900±5.46 N/A
ENSMUST00000132676 9.832±2.89 28.708±21.35 N/A 11.106±2.53 13.324±6.19 24.439±3.60 4.208±0.14 8.434±2.39 4.278±1.24 36.692±14.02 2.352±0.47 29.984±10.36 2.253±0.01 18.434±1.01
ENSMUST00000155507 3.196±0.14 N/A 1.854±0.09 3.089±0.00 3.572±0.44 N/A 1.164±0.07 N/A 1.840±0.20 6.687±0.00 0.953±0.10 3.773±0.76 2.656±0.64 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_0003UD CIL_0003UD_0003 CGP 11:117966079-118024011
CIL_00062Y CIL_00062Y_0002 CGP 11:117986292-118129219

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0006655 ISS phosphatidylglycerol biosynthetic process
GO:0008150 ND biological_process
GO:0008444 ISS CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008654 IEA phospholipid biosynthetic process
GO:0016780 IEA phosphotransferase activity, for other substituted phosphate groups
GO:0032049 ISS cardiolipin biosynthetic process
GO:0046339 ISS diacylglycerol metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075857 PGS1 (1 of 2) phosphatidylglycerophosphate synthase 1 protein_coding Danio_rerio
ENSDARG00000091534 PGS1 (2 of 2) phosphatidylglycerophosphate synthase 1 protein_coding Danio_rerio
ENSG00000087157 PGS1 phosphatidylglycerophosphate synthase 1 protein_coding Homo_sapiens

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