C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003UD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000026611-ENSDARG00000091534 CGP 7955 12:37046023-37083525
GeneTranscriptPositionBiotype
ENSDARG00000026611 (socs3b)
suppressor of cytokine signaling 3b 		ENSDART00000037904 (socs3b-001) 37046023-37050248 protein_coding
ENSDART00000153127 (socs3b-002) 37047157-37065349 protein_coding
ENSDARG00000091534 (PGS1 (2 of 2))
phosphatidylglycerophosphate synthase 1 		ENSDART00000121918 (PGS1 (2 of 2)-201) 37065405-37083525 protein_coding
CIL_0003UD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184557-ENSG00000087157 CGP 9606 17:78356778-78425114
GeneTranscriptPositionBiotype
ENSG00000087157 (PGS1)
phosphatidylglycerophosphate synthase 1 		ENST00000262764 (PGS1-001) 78378640-78424554 protein_coding
ENST00000585521 (PGS1-009) 78378697-78419596 processed_transcript
ENST00000586019 (PGS1-010) 78403835-78419862 protein_coding
ENST00000586325 (PGS1-015) 78378649-78396385 processed_transcript
ENST00000586355 (PGS1-011) 78403964-78419927 protein_coding
ENST00000586510 (PGS1-016) 78378649-78398268 nonsense_mediated_decay
ENST00000586880 (PGS1-013) 78420222-78425114 processed_transcript
ENST00000587356 (PGS1-014) 78378678-78400854 protein_coding
ENST00000588169 (PGS1-005) 78378662-78424141 nonsense_mediated_decay
ENST00000588281 (PGS1-007) 78399289-78424557 processed_transcript
ENST00000589425 (PGS1-002) 78378649-78424554 nonsense_mediated_decay
ENST00000589426 (PGS1-004) 78378657-78424554 nonsense_mediated_decay
ENST00000589689 (PGS1-003) 78378651-78403918 protein_coding
ENST00000591996 (PGS1-008) 78400831-78421911 retained_intron
ENST00000592043 (PGS1-006) 78378670-78403679 protein_coding
ENSG00000184557 (SOCS3)
suppressor of cytokine signaling 3 		ENST00000330871 (SOCS3-001) 78356778-78360077 protein_coding
ENST00000587578 (SOCS3-002) 78359049-78360074 protein_coding
ENSG00000187775 (DNAH17)
dynein, axonemal, heavy chain 17 		ENST00000389840 (DNAH17-201) 78423697-78577394 protein_coding
ENST00000585328 (DNAH17-001) 78423697-78577394 protein_coding
ENST00000586052 (DNAH17-007) 78423905-78491490 processed_transcript
ENST00000586850 (DNAH17-011) 78426487-78429240 processed_transcript
ENST00000587177 (DNAH17-004) 78502143-78510671 retained_intron
ENST00000589793 (DNAH17-002) 78543755-78571322 retained_intron
ENST00000590227 (DNAH17-006) 78423700-78450298 retained_intron
ENST00000591369 (DNAH17-003) 78423697-78472774 nonsense_mediated_decay
ENST00000591647 (DNAH17-005) 78425524-78426720 retained_intron
ENST00000592152 (DNAH17-009) 78451496-78458888 processed_transcript
ENST00000592192 (DNAH17-012) 78426928-78428551 processed_transcript
ENSG00000243870 (RN7SL236P)
RNA, 7SL, cytoplasmic 236, pseudogene 		ENST00000484759 (RN7SL236P-201) 78370852-78371135 misc_RNA
ENSG00000266970 (RP11-806H10.4)
 ENST00000587575 (RP11-806H10.4-002) 78362671-78364905 lincRNA
ENST00000592569 (RP11-806H10.4-001) 78360453-78373911 lincRNA
CIL_0003UD_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000053113-ENSMUSG00000017715 CGP 10090 11:117966079-118024011
GeneTranscriptPositionBiotype
ENSMUSG00000017715 (Pgs1)
phosphatidylglycerophosphate synthase 1 		ENSMUST00000017859 (Pgs1-004) 117986885-118024011 nonsense_mediated_decay
ENSMUST00000100185 (Pgs1-003) 118000795-118023925 nonsense_mediated_decay
ENSMUST00000132676 (Pgs1-001) 117986292-118024011 protein_coding
ENSMUST00000155507 (Pgs1-002) 118012343-118024011 retained_intron
ENSMUSG00000053113 (Socs3)
suppressor of cytokine signaling 3 		ENSMUST00000054002 (Socs3-001) 117966079-117969186 protein_coding
ENSMUST00000123255 (Socs3-002) 117968875-117970047 processed_transcript
ENSMUST00000132295 (Socs3-003) 117968934-117969451 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003UD_0001ENSDARG00000026611ENSDART00000037904ENSDART00000153127ENSDARG00000091534ENSDART00000121918CIL_0003UD_0002ENSG00000087157ENST00000262764ENST00000585521ENST00000586019ENST00000586325ENST00000586355ENST00000586510ENST00000586880ENST00000587356ENST00000588169ENST00000588281ENST00000589425ENST00000589426ENST00000589689ENST00000591996ENST00000592043ENSG00000184557ENST00000330871ENST00000587578ENSG00000187775ENST00000389840ENST00000585328ENST00000586052ENST00000586850ENST00000587177ENST00000589793ENST00000590227ENST00000591369ENST00000591647ENST00000592152ENST00000592192ENSG00000243870ENST00000484759ENSG00000266970ENST00000587575ENST00000592569CIL_0003UD_0003ENSMUSG00000017715ENSMUST00000017859ENSMUST00000100185ENSMUST00000132676ENSMUST00000155507ENSMUSG00000053113ENSMUST00000054002ENSMUST00000123255ENSMUST00000132295
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003UD_0001ENSDARG00000026611ENSDART00000037904ENSDARG00000091534ENSDART00000121918CIL_0003UD_0002ENSG00000087157ENST00000262764ENST00000585521ENST00000587356ENST00000588169ENST00000588281ENST00000589425ENST00000589426ENST00000591996ENST00000592043ENSG00000184557ENST00000330871ENSG00000187775ENST00000389840ENST00000585328ENST00000586052ENST00000590227ENST00000591369ENSG00000243870ENST00000484759ENSG00000266970ENST00000587575ENST00000592569CIL_0003UD_0003ENSMUSG00000017715ENSMUST00000017859ENSMUST00000132676ENSMUST00000155507ENSMUSG00000053113ENSMUST00000054002
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000026611 ENSDART00000037904 N/A N/A N/A 3.408±1.02 N/A N/A 10.137±3.26 19.001±11.40 3.449±0.00 N/A 10.629±0.00 N/A N/A N/A
ENSDART00000153127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000091534 ENSDART00000121918 N/A N/A N/A 6.736±1.04 N/A N/A 1.851±0.48 3.537±0.00 0.418±0.00 N/A 0.127±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087157 ENST00000262764 N/A N/A N/A N/A N/A N/A 2.237±0.00 N/A 1.295±0.00 N/A N/A 5.399±2.01 6.602±0.60 N/A
ENST00000585521 N/A N/A N/A N/A N/A N/A N/A 1.116±0.00 N/A N/A 1.728±0.00 N/A 5.101±0.00 N/A
ENST00000586019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587356 N/A N/A N/A N/A 4.129±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.171±0.00 N/A
ENST00000588281 3.178±0.00 N/A N/A N/A N/A N/A N/A N/A 0.858±0.00 11.991±0.00 N/A 3.369±0.27 3.757±0.00 N/A
ENST00000589425 N/A 3.785±0.00 N/A N/A 2.692±0.00 N/A N/A 5.504±0.00 0.570±0.00 N/A N/A N/A N/A N/A
ENST00000589426 N/A 4.250±0.00 N/A N/A N/A N/A 0.982±0.00 3.813±0.00 N/A N/A 2.010±0.00 3.984±0.00 2.275±0.00 N/A
ENST00000589689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591996 N/A 3.554±0.00 N/A 1.042±0.00 0.986±0.33 N/A 0.238±0.00 N/A 0.616±0.29 3.549±0.00 0.659±0.00 2.267±0.51 1.529±0.46 N/A
ENST00000592043 N/A N/A N/A 3.525±0.00 N/A 3.172±0.64 0.735±0.00 N/A 1.682±0.00 N/A 1.908±0.00 N/A N/A N/A
ENSG00000184557 ENST00000330871 41.031±0.00 73.118±0.00 2.631±0.00 5.881±4.30 20.407±0.91 22.804±18.35 5.058±4.49 5.461±4.89 24.234±6.91 90.081±80.56 11.590±0.51 61.442±59.29 25.888±4.30 8.735±8.03
ENST00000587578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187775 ENST00000389840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.504±4.61
ENST00000585328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.845±0.00
ENST00000586052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.148±0.00 N/A N/A N/A
ENST00000586850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590227 N/A N/A N/A 8.390±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591369 N/A N/A N/A 4.011±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.931±5.20
ENST00000591647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243870 ENST00000484759 N/A 0.484±0.00 N/A 0.469±0.00 0.522±0.00 0.078±0.00 0.078±0.00 0.346±0.00 N/A N/A N/A 1.764±0.00 N/A 0.076±0.00
ENSG00000266970 ENST00000587575 N/A 1.433±0.00 N/A 0.360±0.00 0.970±0.00 N/A N/A 0.288±0.00 0.074±0.00 1.785±0.00 N/A 0.064±0.00 0.329±0.16 0.363±0.33
ENST00000592569 0.321±0.00 0.316±0.00 N/A 0.210±0.00 0.276±0.00 N/A 0.034±0.00 0.420±0.00 0.098±0.00 0.468±0.00 N/A 0.102±0.05 N/A 0.155±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017715 ENSMUST00000017859 11.612±2.75 87.003±41.91 7.893±1.89 15.331±2.96 11.021±1.89 5.451±0.00 5.343±0.30 7.468±0.71 5.386±1.91 16.378±2.60 8.407±0.57 10.085±2.96 14.900±5.46 N/A
ENSMUST00000100185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132676 9.832±2.89 28.708±21.35 N/A 11.106±2.53 13.324±6.19 24.439±3.60 4.208±0.14 8.434±2.39 4.278±1.24 36.692±14.02 2.352±0.47 29.984±10.36 2.253±0.01 18.434±1.01
ENSMUST00000155507 3.196±0.14 N/A 1.854±0.09 3.089±0.00 3.572±0.44 N/A 1.164±0.07 N/A 1.840±0.20 6.687±0.00 0.953±0.10 3.773±0.76 2.656±0.64 N/A
ENSMUSG00000053113 ENSMUST00000054002 3.916±2.69 4.741±0.46 3.294±1.19 2.202±1.61 9.259±5.07 6.397±1.84 1.219±0.42 1.483±0.59 3.414±1.71 11.521±4.65 1.242±0.53 11.353±3.29 9.602±3.33 0.250±0.05
ENSMUST00000123255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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