C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylglycerophosphate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000591996 PGS1-008 ENSG00000087157 9606 + 17:78400831-78421911 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverLungMuscleOvaryPlacentaENST00000591996
Transcript ID Adrenal Brain Breast Heart Liver Lung Muscle Ovary Placenta
ENST00000591996 3.554±0.00 1.042±0.00 0.986±0.33 0.238±0.00 0.616±0.29 3.549±0.00 0.659±0.00 2.267±0.51 1.529±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_0003UD CIL_0003UD_0002 CGP 17:78356778-78425114
CIL_00062Y CIL_00062Y_0001 CGP 17:78378640-78577394

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132676 Pgs1-001 protein_coding Mus_musculus 0 998
ENSMUST00000100185 Pgs1-003 nonsense_mediated_decay Mus_musculus 0 614
ENSMUST00000017859 Pgs1-004 nonsense_mediated_decay Mus_musculus 0 614
ENSMUST00000155507 Pgs1-002 retained_intron Mus_musculus 0 390

Loading