C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156481 Med28-001 ENSMUSG00000015804 10090 + 5:45520221-45529276 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000156481
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000156481 1.357±0.44 1.768±0.20 2.573±0.75 1.433±0.33 2.786±0.00 0.567±0.10 2.230±0.42 1.070±0.51 1.997±0.07 0.930±0.15 3.744±1.73 1.279±0.61 3.260±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X6 CIL_0005X6_0002 CGP 5:45493374-45529276
CIL_0005X3 CIL_0005X3_0002 CGP 5:45520221-45639501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005856 IDA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016020 IEA membrane
GO:0016592 IDA mediator complex
GO:0019827 IMP stem cell maintenance
GO:0030864 IDA cortical actin cytoskeleton
GO:0051151 IMP negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000237380 MED28-001 protein_coding Homo_sapiens 0 647
ENST00000433137 MED28P4-001 processed_pseudogene Homo_sapiens 0 401
ENST00000444288 MED28P3-001 processed_pseudogene Homo_sapiens 0 399
ENST00000456611 MED28P7-001 processed_pseudogene Homo_sapiens 0 407
ENST00000503945 MED28-002 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000612711 MED28-201 protein_coding Homo_sapiens 0 636

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