C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COMM domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159081 Commd1-003 ENSMUSG00000051355 10090 - 11:22896136-22982382 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000159081
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000159081 4.227±1.26 6.423±0.02 3.013±0.00 3.215±0.20 5.271±0.91 3.385±0.85 6.259±0.28 4.306±0.73 3.645±0.73 5.773±1.64 3.752±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BY CIL_0003BY_0002 CGP 11:22834744-22982090
CIL_0004OO CIL_0004OO_0002 CGP 11:22834747-22982382

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005507 ISS copper ion binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006878 ISA cellular copper ion homeostasis
GO:0031398 ISS positive regulation of protein ubiquitination
GO:0031462 ISS Cul2-RING ubiquitin ligase complex
GO:0032088 ISS negative regulation of NF-kappaB transcription factor activity
GO:0032434 ISS regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0055070 ISS copper ion homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311832 COMMD1-001 protein_coding Homo_sapiens 0 619
ENST00000445644 COMMD1-004 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000455659 COMMD1-003 nonsense_mediated_decay Homo_sapiens 1.4013e-45 185
ENST00000471704 COMMD1-007 retained_intron Homo_sapiens 0 481
ENST00000472729 COMMD1-002 processed_transcript Homo_sapiens 0 492

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