C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Wilms tumour 1-associating protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159986 Wtap-004 ENSMUSG00000060475 10090 - 17:12972685-12992192 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungOvaryPlacentaENSMUST00000159986
Transcript ID Brain Liver Lung Ovary Placenta
ENSMUST00000159986 3.368±0.00 1.357±0.07 1.996±0.00 1.335±0.00 1.661±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089P CIL_00089P_0002 VISTA 17:12489717-13093070
CIL_0003I8 CIL_0003I8_0002 CGP 17:12942890-12992546
CIL_0003I5 CIL_0003I5_0002 CGP 17:12966796-13018119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0006397 IEA mRNA processing
GO:0007049 IEA cell cycle
GO:0007275 IEA multicellular organismal development
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0036396 ISS MIS complex
GO:0080009 ISS mRNA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000147359 wtap-002 protein_coding Danio_rerio 0 340
ENSDART00000062552 wtap-001 protein_coding Danio_rerio 0 326
ENST00000337387 WTAP-002 protein_coding Homo_sapiens 0 1925
ENST00000358372 WTAP-001 protein_coding Homo_sapiens 0 678
ENST00000416077 RP3-437C15.1-001 processed_pseudogene Homo_sapiens 0 638
ENST00000614346 WTAP-201 protein_coding Homo_sapiens 0 872
ENST00000621533 WTAP-202 protein_coding Homo_sapiens 0 713

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