C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 123
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160249 Rnf123-001 ENSMUSG00000041528 10090 - 9:108051534-108083346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENSMUST00000160249
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENSMUST00000160249 6.922±0.51 6.299±2.23 5.032±0.00 3.881±0.48 5.986±0.94 5.955±0.61 6.279±1.27 6.106±0.70 4.816±0.29 7.399±0.71 4.360±0.26 5.939±2.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GV CIL_0007GV_0002 CGP 9:108002501-108052801
CIL_0005NE CIL_0005NE_0003 CGP 9:108051534-108083346

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308375 GMPPB-002 protein_coding Homo_sapiens 2e-34 152
ENST00000327697 RNF123-001 protein_coding Homo_sapiens 0 4955
ENST00000432042 RNF123-002 protein_coding Homo_sapiens 0 3042
ENST00000433785 RNF123-007 protein_coding Homo_sapiens 0 1624
ENST00000442552 MST1L-001 transcribed_unprocessed_pseudogene Homo_sapiens 0.000000005 68
ENST00000443204 RNF123-009 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000444689 RNF123-012 nonsense_mediated_decay Homo_sapiens 0 516
ENST00000449682 MST1-001 protein_coding Homo_sapiens 0.0000000000008 81
ENST00000454491 RNF123-008 protein_coding Homo_sapiens 0 291
ENST00000457726 RNF123-003 nonsense_mediated_decay Homo_sapiens 0 3317
ENST00000457982 MST1P2-001 unprocessed_pseudogene Homo_sapiens 0.000000005 68
ENST00000469978 RNF123-011 retained_intron Homo_sapiens 0 667
ENST00000479115 MST1-008 retained_intron Homo_sapiens 0.0000000000007 81
ENST00000480268 MST1-020 retained_intron Homo_sapiens 0.0000000000002 81
ENST00000480687 GMPPB-001 protein_coding Homo_sapiens 4e-34 152
ENST00000481930 MST1-013 retained_intron Homo_sapiens 0.0000000000002 81
ENST00000484269 MST1-018 retained_intron Homo_sapiens 0.0000000000005 81
ENST00000486102 RNF123-005 retained_intron Homo_sapiens 0 2444
ENST00000487805 RNF123-006 retained_intron Homo_sapiens 0 1628
ENST00000488350 MST1-002 retained_intron Homo_sapiens 0.000000000001 81
ENST00000492329 MST1-009 retained_intron Homo_sapiens 0.0000000000006 81
ENST00000494809 MST1-021 retained_intron Homo_sapiens 0.0000000000003 81
ENST00000497359 MST1-007 retained_intron Homo_sapiens 0.0000000000006 81
ENST00000498021 MST1-012 retained_intron Homo_sapiens 0.0000000000002 81
ENST00000498376 RNF123-014 retained_intron Homo_sapiens 0 274
ENST00000624762 MST1L-006 processed_transcript Homo_sapiens 0.000000009 68

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