C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | optic atrophy 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000160475  |
Opa1-002 |
ENSMUSG00000038084 |
10090 | + |
16:29579380-29630404  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0000N8 | CIL_0000N8_0002 | CGP | 16:29395853-29654884 |
| CIL_0008CV | CIL_0008CV_0002 | VISTA | 16:29419360-30021162 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001843 | IMP | neural tube closure |
| GO:0003924 | IEA | GTPase activity |
| GO:0005525 | IEA | GTP binding |
| GO:0005739 | IDA | mitochondrion |
| GO:0005743 | IDA | mitochondrial inner membrane |
| GO:0006184 | IEA | GTP catabolic process |
| GO:0007005 | IDA | mitochondrion organization |
| GO:0008053 | IDA | mitochondrial fusion |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000361150
|
OPA1-201 | protein_coding | Homo_sapiens | 0 | 2671 |
|
ENST00000361510
|
OPA1-202 | protein_coding | Homo_sapiens | 0 | 2671 |
|
ENST00000361715
|
OPA1-203 | protein_coding | Homo_sapiens | 0 | 2671 |
|
ENST00000361828
|
OPA1-204 | protein_coding | Homo_sapiens | 0 | 3509 |
|
ENST00000361908
|
OPA1-001 | protein_coding | Homo_sapiens | 0 | 2671 |
|
ENST00000392438
|
OPA1-002 | protein_coding | Homo_sapiens | 0 | 2739 |
|
ENST00000445863
|
OPA1-009 | protein_coding | Homo_sapiens | 0 | 529 |
|
ENST00000475899
|
OPA1-015 | retained_intron | Homo_sapiens | 0 | 848 |
|
ENST00000483516
|
OPA1-008 | retained_intron | Homo_sapiens | 0 | 327 |
|
ENST00000495476
|
OPA1-007 | retained_intron | Homo_sapiens | 0 | 390 |
|
ENST00000497189
|
OPA1-013 | retained_intron | Homo_sapiens | 0 | 599 |
