C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000N8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000127249-ENSG00000198836 CGP 9606 3:193402077-193697823
GeneTranscriptPositionBiotype
ENSG00000127249 (ATP13A4)
ATPase type 13A4 		ENST00000295548 (ATP13A4-009) 193458598-193554799 protein_coding
ENST00000342695 (ATP13A4-003) 193402358-193555122 protein_coding
ENST00000392443 (ATP13A4-007) 193402358-193554987 protein_coding
ENST00000400270 (ATP13A4-010) 193402077-193418983 protein_coding
ENST00000428352 (ATP13A4-001) 193402078-193467348 nonsense_mediated_decay
ENST00000437904 (ATP13A4-011) 193438494-193442552 nonsense_mediated_decay
ENST00000450950 (ATP13A4-004) 193402350-193554869 nonsense_mediated_decay
ENST00000474776 (ATP13A4-005) 193433860-193439095 retained_intron
ENST00000482964 (ATP13A4-006) 193402500-193412371 processed_transcript
ENST00000489140 (ATP13A4-008) 193502545-193593111 processed_transcript
ENST00000490925 (ATP13A4-002) 193440115-193554907 retained_intron
ENSG00000198836 (OPA1)
optic atrophy 1 (autosomal dominant) 		ENST00000361150 (OPA1-201) 193593144-193697810 protein_coding
ENST00000361510 (OPA1-202) 193593144-193697810 protein_coding
ENST00000361715 (OPA1-203) 193593144-193697810 protein_coding
ENST00000361828 (OPA1-204) 193593144-193697810 protein_coding
ENST00000361908 (OPA1-001) 193593144-193697811 protein_coding
ENST00000392436 (OPA1-005) 193593352-193626144 protein_coding
ENST00000392437 (OPA1-004) 193593247-193618920 protein_coding
ENST00000392438 (OPA1-002) 193593144-193697823 protein_coding
ENST00000419435 (OPA1-011) 193593281-193618937 protein_coding
ENST00000429164 (OPA1-010) 193667176-193668621 protein_coding
ENST00000434811 (OPA1-006) 193614992-193637212 protein_coding
ENST00000445863 (OPA1-009) 193662891-193668931 protein_coding
ENST00000475899 (OPA1-015) 193637216-193644151 retained_intron
ENST00000482865 (OPA1-014) 193648766-193659514 retained_intron
ENST00000483516 (OPA1-008) 193645612-193648460 retained_intron
ENST00000487986 (OPA1-012) 193614788-193628544 processed_transcript
ENST00000495261 (OPA1-003) 193691394-193697526 retained_intron
ENST00000495476 (OPA1-007) 193626058-193638048 retained_intron
ENST00000497189 (OPA1-013) 193618827-193642985 retained_intron
ENSG00000207370 (Y_RNA)
Y RNA 		ENST00000384640 (Y_RNA.1-743) 193624189-193624301 misc_RNA
ENSG00000225473 (ATP13A4-AS1)
ATP13A4 antisense RNA 1 		ENST00000426459 (ATP13A4-AS1-002) 193553412-193554912 antisense
ENST00000431512 (ATP13A4-AS1-001) 193553213-193555088 antisense
ENSG00000236297 (RP11-175P19.2)
 ENST00000420064 (RP11-175P19.2-001) 193578812-193579413 transcribed_processed_pseudogene
ENST00000449483 (RP11-175P19.2-002) 193579001-193593090 processed_transcript
CIL_0000N8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038094-ENSMUSG00000038084 CGP 10090 16:29395853-29654884
GeneTranscriptPositionBiotype
ENSMUSG00000038084 (Opa1)
optic atrophy 1 		ENSMUST00000038867 (Opa1-003) 29579380-29651876 protein_coding
ENSMUST00000159036 (Opa1-004) 29579378-29614624 retained_intron
ENSMUST00000160101 (Opa1-006) 29616625-29618707 retained_intron
ENSMUST00000160153 (Opa1-005) 29579392-29651879 retained_intron
ENSMUST00000160475 (Opa1-002) 29579380-29630404 nonsense_mediated_decay
ENSMUST00000160597 (Opa1-001) 29579334-29654884 protein_coding
ENSMUST00000161186 (Opa1-008) 29579380-29649000 protein_coding
ENSMUST00000162240 (Opa1-007) 29587014-29610906 protein_coding
ENSMUSG00000038094 (Atp13a4)
ATPase type 13A4 		ENSMUST00000039090 (Atp13a4-003) 29420745-29544864 protein_coding
ENSMUST00000057018 (Atp13a4-006) 29396041-29541483 protein_coding
ENSMUST00000182013 (Atp13a4-002) 29396091-29544864 nonsense_mediated_decay
ENSMUST00000182094 (Atp13a4-011) 29396417-29407638 retained_intron
ENSMUST00000182168 (Atp13a4-010) 29420736-29441160 nonsense_mediated_decay
ENSMUST00000182357 (Atp13a4-008) 29408668-29440123 retained_intron
ENSMUST00000182573 (Atp13a4-007) 29395853-29456580 nonsense_mediated_decay
ENSMUST00000182627 (Atp13a4-001) 29396028-29541597 protein_coding
ENSMUST00000182676 (Atp13a4-009) 29396046-29408325 processed_transcript
ENSMUST00000182694 (Atp13a4-004) 29540479-29544859 retained_intron
ENSMUST00000182824 (Atp13a4-005) 29540426-29544798 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000N8_0001ENSG00000127249ENST00000295548ENST00000342695ENST00000392443ENST00000400270ENST00000428352ENST00000437904ENST00000450950ENST00000474776ENST00000482964ENST00000489140ENST00000490925ENSG00000198836ENST00000361150ENST00000361510ENST00000361715ENST00000361828ENST00000361908ENST00000392436ENST00000392437ENST00000392438ENST00000419435ENST00000429164ENST00000434811ENST00000445863ENST00000475899ENST00000482865ENST00000483516ENST00000487986ENST00000495261ENST00000495476ENST00000497189ENSG00000207370ENST00000384640ENSG00000225473ENST00000426459ENST00000431512ENSG00000236297ENST00000420064ENST00000449483CIL_0000N8_0002ENSMUSG00000038084ENSMUST00000038867ENSMUST00000159036ENSMUST00000160101ENSMUST00000160153ENSMUST00000160475ENSMUST00000160597ENSMUST00000161186ENSMUST00000162240ENSMUSG00000038094ENSMUST00000039090ENSMUST00000057018ENSMUST00000182013ENSMUST00000182094ENSMUST00000182168ENSMUST00000182357ENSMUST00000182573ENSMUST00000182627ENSMUST00000182676ENSMUST00000182694ENSMUST00000182824
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000N8_0001ENSG00000127249ENST00000295548ENST00000342695ENST00000392443ENST00000400270ENST00000428352ENST00000437904ENST00000450950ENST00000482964ENST00000489140ENST00000490925ENSG00000198836ENST00000361150ENST00000361510ENST00000361715ENST00000361828ENST00000361908ENST00000392438ENSG00000207370ENST00000384640ENSG00000225473ENST00000426459ENST00000431512ENSG00000236297ENST00000420064ENST00000449483CIL_0000N8_0002ENSMUSG00000038084ENSMUST00000038867ENSMUST00000159036ENSMUST00000160153ENSMUST00000160597ENSMUST00000161186ENSMUSG00000038094ENSMUST00000039090ENSMUST00000057018ENSMUST00000182013ENSMUST00000182094ENSMUST00000182357ENSMUST00000182573ENSMUST00000182627ENSMUST00000182676ENSMUST00000182824
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127249 ENST00000295548 N/A N/A N/A N/A N/A 0.416±0.00 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000342695 N/A N/A N/A 1.486±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392443 N/A N/A N/A 1.736±0.00 N/A N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A
ENST00000400270 N/A N/A N/A N/A N/A 0.048±0.00 0.017±0.00 N/A 0.118±0.00 4.772±0.00 N/A N/A 0.054±0.00 0.235±0.00
ENST00000428352 N/A N/A 0.225±0.00 N/A 0.236±0.00 0.430±0.38 N/A 0.176±0.00 0.048±0.00 N/A N/A 0.237±0.11 0.046±0.00 0.102±0.00
ENST00000437904 N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000450950 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.007±0.00 N/A 0.091±0.00 N/A N/A
ENST00000474776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.00
ENST00000489140 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490925 N/A N/A N/A 3.038±0.00 0.506±0.00 0.439±0.00 N/A 0.140±0.00 0.052±0.00 16.079±0.00 N/A 0.371±0.13 0.047±0.00 0.062±0.00
ENSG00000198836 ENST00000361150 N/A N/A 1.393±0.00 N/A 2.361±0.00 N/A N/A 1.753±0.00 N/A N/A N/A 1.224±0.39 0.520±0.00 1.797±0.00
ENST00000361510 N/A N/A N/A N/A N/A N/A N/A 2.236±0.00 N/A N/A N/A 1.218±0.70 N/A N/A
ENST00000361715 N/A N/A N/A N/A N/A 1.226±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000361828 3.938±0.00 N/A N/A N/A 2.416±0.00 N/A N/A N/A 0.966±0.00 N/A N/A N/A 1.012±0.00 N/A
ENST00000361908 3.363±0.00 3.295±0.00 0.900±0.00 N/A 2.484±0.00 8.811±0.00 3.050±1.07 2.507±0.00 2.961±0.59 1.874±0.64 2.146±0.03 1.789±0.93 1.816±1.01 2.458±0.00
ENST00000392436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392438 N/A 3.435±0.00 0.520±0.00 7.967±1.96 2.270±0.59 3.825±0.00 4.512±0.00 N/A 3.231±0.00 1.885±1.43 0.618±0.00 2.163±0.35 1.622±0.10 3.679±0.17
ENST00000419435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207370 ENST00000384640 N/A N/A N/A 0.833±0.00 N/A 0.373±0.00 N/A N/A N/A N/A N/A N/A N/A 0.381±0.00
ENSG00000225473 ENST00000426459 N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A 0.775±0.00 N/A N/A
ENST00000431512 N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A 1.552±0.00 N/A N/A N/A
ENSG00000236297 ENST00000420064 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A
ENST00000449483 N/A 0.210±0.00 N/A N/A N/A 0.218±0.00 0.051±0.00 N/A N/A N/A 0.016±0.00 N/A 0.294±0.01 0.372±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038084 ENSMUST00000038867 N/A N/A N/A N/A N/A N/A N/A N/A 2.388±0.44 N/A 2.899±0.00 4.679±0.69 6.891±1.65 N/A
ENSMUST00000159036 N/A 10.306±2.56 N/A N/A N/A 2.768±0.70 N/A N/A 4.619±0.80 N/A N/A 4.758±1.29 N/A N/A
ENSMUST00000160101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160153 1.618±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160597 7.647±2.39 6.028±1.32 9.129±0.18 13.034±0.79 5.021±2.84 5.111±0.48 15.697±0.50 10.639±0.24 4.113±1.24 2.863±1.58 10.473±3.51 4.671±2.14 4.982±2.05 1.980±1.04
ENSMUST00000161186 N/A N/A N/A 17.047±0.00 N/A N/A N/A N/A 2.831±0.52 N/A N/A 7.668±4.36 5.790±3.06 6.000±5.74
ENSMUST00000162240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038094 ENSMUST00000039090 0.011±0.00 N/A N/A N/A 0.024±0.00 N/A N/A N/A 0.003±0.00 N/A N/A 0.132±0.00 0.018±0.00 N/A
ENSMUST00000057018 N/A N/A N/A 0.345±0.24 N/A N/A N/A 0.268±0.02 N/A N/A N/A N/A N/A 0.366±0.21
ENSMUST00000182013 0.059±0.00 N/A N/A N/A N/A 0.090±0.04 N/A 0.309±0.09 N/A 0.425±0.00 N/A 0.014±0.00 N/A 0.108±0.00
ENSMUST00000182094 0.161±0.00 N/A 0.086±0.00 N/A N/A N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A 4.779±0.00
ENSMUST00000182168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182357 0.023±0.00 N/A 0.008±0.00 0.252±0.11 0.066±0.04 0.145±0.03 0.022±0.00 0.484±0.18 0.028±0.02 1.137±0.18 0.022±0.01 0.134±0.11 0.015±0.00 1.197±0.18
ENSMUST00000182573 0.051±0.00 N/A N/A N/A N/A 0.041±0.00 N/A 0.094±0.00 N/A 0.499±0.16 N/A 0.088±0.00 0.010±0.00 1.002±0.00
ENSMUST00000182627 N/A N/A N/A 0.726±0.00 N/A N/A N/A 0.224±0.06 N/A 0.653±0.24 N/A 0.044±0.00 N/A 0.584±0.08
ENSMUST00000182676 N/A N/A N/A 1.006±0.00 0.119±0.07 N/A N/A N/A 0.014±0.01 N/A N/A 0.014±0.00 0.006±0.00 N/A
ENSMUST00000182694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182824 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A

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