C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Wilms tumour 1-associating protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160781 Wtap-003 ENSMUSG00000060475 10090 - 17:12973552-12992546 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160781
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160781 4.892±0.45 15.387±1.25 6.499±0.54 8.340±2.44 4.652±0.91 7.143±1.25 4.086±0.52 6.079±1.00 4.855±2.67 7.101±1.23 4.078±1.79 6.632±2.31 8.982±3.98 1.834±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089P CIL_00089P_0002 VISTA 17:12489717-13093070
CIL_0003I8 CIL_0003I8_0002 CGP 17:12942890-12992546
CIL_0003I5 CIL_0003I5_0002 CGP 17:12966796-13018119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0006397 IEA mRNA processing
GO:0007049 IEA cell cycle
GO:0007275 IEA multicellular organismal development
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0036396 ISS MIS complex
GO:0080009 ISS mRNA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000147359 wtap-002 protein_coding Danio_rerio 0 340
ENSDART00000062552 wtap-001 protein_coding Danio_rerio 0 326
ENST00000337387 WTAP-002 protein_coding Homo_sapiens 0 1890
ENST00000358372 WTAP-001 protein_coding Homo_sapiens 0 680
ENST00000416077 RP3-437C15.1-001 processed_pseudogene Homo_sapiens 0 638
ENST00000614346 WTAP-201 protein_coding Homo_sapiens 0 872
ENST00000621533 WTAP-202 protein_coding Homo_sapiens 0 678

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