C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160849 Stag3-008 ENSMUSG00000036928 10090 + 5:138304438-138309246 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonHeartKidneyLungMuscleOvaryENSMUST00000160849
Transcript ID Adrenal Bladder Colon Heart Kidney Lung Muscle Ovary
ENSMUST00000160849 0.262±0.17 0.667±0.00 0.167±0.00 0.337±0.24 0.060±0.00 0.182±0.00 0.141±0.01 1.407±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0005CH CIL_0005CH_0002 CGP 5:138264952-138312393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 IDA synaptonemal complex
GO:0000800 IDA lateral element
GO:0000802 IDA transverse filament
GO:0001673 IDA male germ cell nucleus
GO:0007065 ISS male meiosis sister chromatid cohesion
GO:0007066 ISS female meiosis sister chromatid cohesion
GO:0030893 IDA meiotic cohesin complex
GO:0034991 IDA nuclear meiotic cohesin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369872 SYPL2-001 protein_coding Homo_sapiens 0.00003 53

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