C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005CH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213420-ENSG00000066923 CGP 9606 7:100169606-100221488
GeneTranscriptPositionBiotype
ENSG00000066923 (STAG3)
stromal antigen 3 		ENST00000317296 (STAG3-001) 100177916-100214381 protein_coding
ENST00000394018 (STAG3-003) 100177743-100214380 protein_coding
ENST00000412190 (STAG3-022) 100205273-100214380 protein_coding
ENST00000416412 (STAG3-012) 100177866-100186297 protein_coding
ENST00000422690 (STAG3-009) 100177929-100182839 protein_coding
ENST00000426455 (STAG3-004) 100177563-100214380 protein_coding
ENST00000439782 (STAG3-010) 100177936-100189468 protein_coding
ENST00000440830 (STAG3-006) 100197474-100214383 processed_transcript
ENST00000451963 (STAG3-023) 100205357-100221488 nonsense_mediated_decay
ENST00000459699 (STAG3-013) 100181378-100189596 processed_transcript
ENST00000476057 (STAG3-021) 100200138-100200946 retained_intron
ENST00000477469 (STAG3-016) 100197802-100199602 retained_intron
ENST00000479359 (STAG3-017) 100200147-100202015 retained_intron
ENST00000482546 (STAG3-011) 100177937-100180895 retained_intron
ENST00000491498 (STAG3-020) 100197442-100214381 processed_transcript
ENST00000492674 (STAG3-018) 100211659-100214382 retained_intron
ENST00000496157 (STAG3-002) 100177935-100214387 retained_intron
ENST00000615138 (STAG3-201) 100177743-100214387 protein_coding
ENST00000620100 (STAG3-202) 100177743-100214387 protein_coding
ENSG00000213413 (PVRIG)
poliovirus receptor related immunoglobulin domain containing 		ENST00000317271 (PVRIG-001) 100219236-100221490 protein_coding
ENST00000471803 (PVRIG-002) 100218241-100219335 processed_transcript
ENSG00000213420 (GPC2)
glypican 2 		ENST00000292377 (GPC2-001) 100169606-100177367 protein_coding
ENST00000471050 (GPC2-003) 100169629-100174724 processed_transcript
ENST00000471717 (GPC2-002) 100173458-100177372 retained_intron
ENST00000480087 (GPC2-005) 100172190-100177369 processed_transcript
ENST00000482569 (GPC2-009) 100176229-100177369 processed_transcript
ENST00000486702 (GPC2-008) 100171069-100172218 retained_intron
ENST00000490629 (GPC2-007) 100171651-100175785 retained_intron
ENSG00000239521 (GATS)
GATS, stromal antigen 3 opposite strand 		ENST00000328453 (GATS-011) 100200653-100272206 nonsense_mediated_decay
ENST00000414739 (GATS-009) 100212022-100272214 nonsense_mediated_decay
ENST00000414997 (GATS-007) 100202213-100211551 processed_transcript
ENST00000435519 (GATS-010) 100211584-100272214 nonsense_mediated_decay
ENST00000436886 (GATS-014) 100200653-100272218 protein_coding
ENST00000437485 (GATS-005) 100202290-100223698 processed_transcript
ENST00000440058 (GATS-008) 100202241-100223943 processed_transcript
ENST00000445230 (GATS-006) 100211935-100215179 processed_transcript
ENST00000454084 (GATS-004) 100202313-100272187 protein_coding
ENST00000538588 (GATS-013) 100222645-100246548 processed_transcript
ENST00000543273 (GATS-002) 100200653-100272208 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_0005CH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029510-ENSMUSG00000036928 CGP 10090 5:138264952-138312393
GeneTranscriptPositionBiotype
ENSMUSG00000029510 (Gpc2)
glypican 2 (cerebroglycan) 		ENSMUST00000014089 (Gpc2-004) 138273660-138279965 protein_coding
ENSMUST00000159067 (Gpc2-007) 138264952-138279958 nonsense_mediated_decay
ENSMUST00000159350 (Gpc2-008) 138276641-138279963 processed_transcript
ENSMUST00000159689 (Gpc2-005) 138273657-138279962 retained_intron
ENSMUST00000161055 (Gpc2-006) 138275528-138278237 retained_intron
ENSMUST00000161827 (Gpc2-001) 138273655-138280005 protein_coding
ENSMUST00000161984 (Gpc2-002) 138273657-138279982 nonsense_mediated_decay
ENSMUST00000162909 (Gpc2-003) 138273657-138279985 retained_intron
ENSMUSG00000036928 (Stag3)
stromal antigen 3 		ENSMUST00000048028 (Stag3-001) 138280526-138312393 protein_coding
ENSMUST00000159189 (Stag3-009) 138309201-138312386 nonsense_mediated_decay
ENSMUST00000159483 (Stag3-003) 138280526-138312390 retained_intron
ENSMUST00000160729 (Stag3-005) 138280240-138290751 protein_coding
ENSMUST00000160849 (Stag3-008) 138304438-138309246 protein_coding
ENSMUST00000161113 (Stag3-002) 138280509-138312393 retained_intron
ENSMUST00000161615 (Stag3-007) 138299176-138301441 processed_transcript
ENSMUST00000161691 (Stag3-006) 138280556-138290406 protein_coding
ENSMUST00000162245 (Stag3-004) 138280544-138312393 protein_coding
ENSMUSG00000075593 (Gal3st4)
galactose-3-O-sulfotransferase 4 		ENSMUST00000100530 (Gal3st4-003) 138264925-138272754 protein_coding
ENSMUST00000161279 (Gal3st4-001) 138264938-138272801 protein_coding
ENSMUST00000161647 (Gal3st4-002) 138264921-138272840 protein_coding
ENSMUST00000161665 (Gal3st4-005) 138270993-138272749 protein_coding
ENSMUST00000162557 (Gal3st4-004) 138264938-138272801 processed_transcript
ENSMUSG00000085227 (6330418K02Rik)
RIKEN cDNA 6330418K02 gene 		ENSMUST00000124298 (6330418K02Rik-001) 138264043-138266661 processed_transcript
ENSMUST00000125662 (6330418K02Rik-002) 138264069-138266661 processed_transcript
ENSMUST00000138911 (6330418K02Rik-005) 138265544-138266083 processed_transcript
ENSMUST00000141454 (6330418K02Rik-003) 138264054-138266332 processed_transcript
ENSMUST00000144460 (6330418K02Rik-004) 138264108-138266229 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005CH_0001ENSG00000066923ENST00000317296ENST00000394018ENST00000412190ENST00000451963ENST00000491498ENSG00000213413ENST00000317271ENSG00000213420ENST00000292377ENST00000471050ENST00000471717ENST00000480087ENST00000482569ENST00000490629ENSG00000239521ENST00000328453ENST00000414739ENST00000436886ENST00000538588ENST00000543273CIL_0005CH_0002ENSMUSG00000029510ENSMUST00000014089ENSMUST00000159689ENSMUST00000161055ENSMUST00000161827ENSMUST00000162909ENSMUSG00000036928ENSMUST00000048028ENSMUST00000159189ENSMUST00000159483ENSMUST00000160729ENSMUST00000160849ENSMUST00000161113ENSMUST00000161615ENSMUST00000161691ENSMUST00000162245ENSMUSG00000075593ENSMUST00000100530ENSMUST00000161647ENSMUST00000162557ENSMUSG00000085227ENSMUST00000124298
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000066923 ENST00000317296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.622±1.76
ENST00000394018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.861±0.00
ENST00000412190 N/A N/A N/A N/A N/A N/A N/A N/A 2.156±0.00 N/A N/A 15.193±0.00 N/A 78.721±0.00
ENST00000416412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451963 N/A 6.808±0.00 N/A N/A 1.468±0.00 1.653±0.00 0.589±0.00 1.290±0.18 0.621±0.00 N/A N/A 3.545±0.56 0.804±0.00 N/A
ENST00000459699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491498 N/A 3.720±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.244±0.00
ENST00000492674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213413 ENST00000317271 N/A 11.567±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213420 ENST00000292377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.374±0.13 N/A 6.185±3.50
ENST00000471050 0.220±0.00 N/A N/A 0.904±0.00 N/A 0.132±0.00 0.062±0.00 0.196±0.00 N/A 0.244±0.00 0.056±0.00 0.656±0.00 0.110±0.08 0.722±0.00
ENST00000471717 N/A 0.858±0.00 N/A N/A 0.372±0.00 0.836±0.00 N/A 0.188±0.00 N/A 0.087±0.00 N/A 0.066±0.00 0.016±0.00 N/A
ENST00000480087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.617±0.06 0.251±0.00 N/A
ENST00000482569 N/A N/A N/A N/A 1.345±0.00 0.377±0.00 N/A N/A N/A N/A N/A 0.921±0.00 N/A N/A
ENST00000486702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490629 N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A
ENSG00000239521 ENST00000328453 5.075±0.00 N/A N/A 9.464±3.44 1.372±0.69 1.188±0.67 0.613±0.00 N/A N/A 0.841±0.15 19.438±0.00 4.568±1.39 1.028±0.15 10.842±0.00
ENST00000414739 N/A N/A N/A N/A N/A 1.807±0.00 0.925±0.00 1.295±0.00 N/A N/A N/A N/A 2.112±0.10 N/A
ENST00000414997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436886 N/A N/A N/A 7.209±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.168±0.00 N/A
ENST00000543273 N/A N/A N/A 9.897±0.00 N/A N/A 0.957±0.00 N/A N/A N/A 4.169±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029510 ENSMUST00000014089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.840±0.00 N/A
ENSMUST00000159067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.823±0.14 N/A
ENSMUST00000161055 N/A N/A N/A 110.833±18.90 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161827 N/A N/A 4.777±0.00 148.545±18.06 N/A N/A N/A N/A N/A N/A N/A N/A 3.616±0.63 6.005±2.78
ENSMUST00000161984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162909 5.449±0.09 N/A 4.921±1.48 49.504±9.64 N/A N/A N/A N/A N/A N/A N/A 3.176±0.59 2.131±0.56 0.382±0.00
ENSMUSG00000036928 ENSMUST00000048028 N/A N/A N/A N/A 0.091±0.05 N/A N/A 0.016±0.01 0.363±0.17 N/A N/A 0.249±0.00 0.795±0.00 73.115±2.80
ENSMUST00000159189 N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A 0.063±0.02 N/A N/A N/A
ENSMUST00000159483 0.150±0.11 N/A 0.251±0.13 1.543±0.07 0.045±0.01 0.035±0.00 0.043±0.00 N/A 0.212±0.08 0.062±0.02 0.018±0.00 0.273±0.14 2.481±2.11 N/A
ENSMUST00000160729 N/A N/A N/A N/A 0.134±0.04 N/A N/A 0.119±0.00 N/A 0.115±0.01 0.068±0.00 0.244±0.11 N/A N/A
ENSMUST00000160849 N/A 0.262±0.17 0.667±0.00 N/A N/A 0.167±0.00 0.337±0.24 0.060±0.00 N/A 0.182±0.00 0.141±0.01 1.407±0.00 N/A N/A
ENSMUST00000161113 0.072±0.02 0.068±0.00 0.077±0.03 0.541±0.34 0.053±0.05 0.150±0.04 0.020±0.00 0.039±0.02 0.125±0.11 0.053±0.01 N/A 0.149±0.06 1.372±0.95 N/A
ENSMUST00000161615 N/A N/A N/A N/A 0.235±0.00 N/A N/A 0.080±0.00 N/A N/A 0.094±0.00 1.335±0.33 N/A N/A
ENSMUST00000161691 N/A N/A N/A N/A N/A N/A N/A 0.105±0.01 0.062±0.01 N/A 0.045±0.00 N/A N/A N/A
ENSMUST00000162245 0.216±0.07 0.019±0.00 0.103±0.01 0.568±0.16 0.048±0.02 0.176±0.00 0.081±0.03 0.019±0.00 0.147±0.12 N/A 0.009±0.00 0.217±0.16 3.851±2.32 60.511±0.00
ENSMUSG00000075593 ENSMUST00000100530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00 N/A N/A N/A
ENSMUST00000161279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.537±0.00 N/A N/A N/A
ENSMUST00000161665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162557 N/A N/A N/A 2.963±0.00 N/A N/A N/A N/A N/A N/A 0.743±0.00 N/A 3.008±0.00 1.303±0.00
ENSMUSG00000085227 ENSMUST00000124298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.051±0.00 N/A
ENSMUST00000125662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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