C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stromal antigen 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036928 Stag3 10090 + 5:138280240-138312393 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048028 Stag3-001 138280526-138312393 protein_coding
  ENSMUST00000159189 Stag3-009 138309201-138312386 nonsense_mediated_decay
  ENSMUST00000159483 Stag3-003 138280526-138312390 retained_intron
  ENSMUST00000160729 Stag3-005 138280240-138290751 protein_coding
  ENSMUST00000160849 Stag3-008 138304438-138309246 protein_coding
  ENSMUST00000161113 Stag3-002 138280509-138312393 retained_intron
  ENSMUST00000161615 Stag3-007 138299176-138301441 processed_transcript
  ENSMUST00000161691 Stag3-006 138280556-138290406 protein_coding
  ENSMUST00000162245 Stag3-004 138280544-138312393 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048028ENSMUST00000159189ENSMUST00000159483ENSMUST00000160729ENSMUST00000160849ENSMUST00000161113ENSMUST00000161615ENSMUST00000161691ENSMUST00000162245
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048028 N/A N/A N/A N/A 0.091±0.05 N/A N/A 0.016±0.01 0.363±0.17 N/A N/A 0.249±0.00 0.795±0.00 73.115±2.80
ENSMUST00000159189 N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A 0.063±0.02 N/A N/A N/A
ENSMUST00000159483 0.150±0.11 N/A 0.251±0.13 1.543±0.07 0.045±0.01 0.035±0.00 0.043±0.00 N/A 0.212±0.08 0.062±0.02 0.018±0.00 0.273±0.14 2.481±2.11 N/A
ENSMUST00000160729 N/A N/A N/A N/A 0.134±0.04 N/A N/A 0.119±0.00 N/A 0.115±0.01 0.068±0.00 0.244±0.11 N/A N/A
ENSMUST00000160849 N/A 0.262±0.17 0.667±0.00 N/A N/A 0.167±0.00 0.337±0.24 0.060±0.00 N/A 0.182±0.00 0.141±0.01 1.407±0.00 N/A N/A
ENSMUST00000161113 0.072±0.02 0.068±0.00 0.077±0.03 0.541±0.34 0.053±0.05 0.150±0.04 0.020±0.00 0.039±0.02 0.125±0.11 0.053±0.01 N/A 0.149±0.06 1.372±0.95 N/A
ENSMUST00000161615 N/A N/A N/A N/A 0.235±0.00 N/A N/A 0.080±0.00 N/A N/A 0.094±0.00 1.335±0.33 N/A N/A
ENSMUST00000161691 N/A N/A N/A N/A N/A N/A N/A 0.105±0.01 0.062±0.01 N/A 0.045±0.00 N/A N/A N/A
ENSMUST00000162245 0.216±0.07 0.019±0.00 0.103±0.01 0.568±0.16 0.048±0.02 0.176±0.00 0.081±0.03 0.019±0.00 0.147±0.12 N/A 0.009±0.00 0.217±0.16 3.851±2.32 60.511±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0005CH CIL_0005CH_0002 CGP 5:138264952-138312393

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 IDA synaptonemal complex
GO:0000800 IDA lateral element
GO:0000802 IDA transverse filament
GO:0001673 IDA male germ cell nucleus
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IEA nucleolus
GO:0007065 ISS male meiosis sister chromatid cohesion
GO:0007066 ISS female meiosis sister chromatid cohesion
GO:0030893 IDA meiotic cohesin complex
GO:0034991 IDA nuclear meiotic cohesin complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076794 STAG3 stromal antigen 3 protein_coding Danio_rerio
ENSG00000066923 STAG3 stromal antigen 3 protein_coding Homo_sapiens

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