C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: threonine synthase-like 2 (bacterial)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160918 Thnsl2-001 ENSMUSG00000054474 10090 - 6:71128166-71144346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160918
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160918 1.625±0.00 9.649±3.58 0.660±0.16 0.324±0.13 3.816±0.73 7.839±2.27 0.600±0.29 34.814±14.35 13.196±10.69 3.343±1.46 1.067±0.55 3.474±1.65 2.448±3.01 0.522±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Q8 CIL_0004Q8_0002 CGP 6:71128166-71205023

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0009071 IDA serine family amino acid catabolic process
GO:0016311 IDA dephosphorylation
GO:0016829 IEA lyase activity
GO:0030170 IDA pyridoxal phosphate binding
GO:0046360 IDA 2-oxobutyrate biosynthetic process
GO:0070905 IDA serine binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324166 THNSL2-001 protein_coding Homo_sapiens 0 1498
ENST00000343544 THNSL2-002 protein_coding Homo_sapiens 0 1195
ENST00000377254 THNSL2-201 protein_coding Homo_sapiens 0 745
ENST00000419759 THNSL2-005 protein_coding Homo_sapiens 0 416
ENST00000449349 THNSL2-004 protein_coding Homo_sapiens 0 754
ENST00000464022 THNSL2-006 retained_intron Homo_sapiens 0 324
ENST00000475910 THNSL2-003 retained_intron Homo_sapiens 0 508
ENST00000476349 THNSL2-007 retained_intron Homo_sapiens 0 366
ENST00000496165 THNSL2-009 processed_transcript Homo_sapiens 0 324
ENST00000496844 THNSL2-008 processed_transcript Homo_sapiens 0 760

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