C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD52 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161045 Rad52-002 ENSMUSG00000030166 10090 + 6:119902703-119922828 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000161045
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000161045 1.904±0.00 1.948±0.58 2.910±0.57 4.452±0.16 3.188±0.00 1.491±0.00 0.835±0.00 1.032±0.00 2.406±0.00 2.212±0.48 2.989±0.81 2.087±0.04 2.637±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TY CIL_0007TY_0002 VISTA 6:119665436-120266145
CIL_0008AW CIL_0008AW_0002 VISTA 6:119874234-120475208
CIL_0006C0 CIL_0006C0_0002 CGP 6:119902698-120038672

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IDA double-strand break repair via homologous recombination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228345 RAD52-014 retained_intron Homo_sapiens 0 231
ENST00000358495 RAD52-001 protein_coding Homo_sapiens 0 440
ENST00000397230 RAD52-007 protein_coding Homo_sapiens 3e-20 102
ENST00000430095 RAD52-008 protein_coding Homo_sapiens 0 440
ENST00000461568 RAD52-002 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000463750 RAD52-004 retained_intron Homo_sapiens 0 444
ENST00000468231 RAD52-003 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000481052 RAD52-005 retained_intron Homo_sapiens 0 346
ENST00000488642 RAD52-006 retained_intron Homo_sapiens 0 231
ENST00000536177 RAD52-017 protein_coding Homo_sapiens 0 440
ENST00000539046 RAD52-201 protein_coding Homo_sapiens 0 231
ENST00000542584 RAD52-010 processed_transcript Homo_sapiens 0 436
ENST00000542785 RAD52-018 protein_coding Homo_sapiens 2e-32 143
ENST00000543912 RAD52-009 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000545564 RAD52-202 protein_coding Homo_sapiens 0 217
ENST00000545967 RAD52-011 processed_transcript Homo_sapiens 4e-20 102

Loading