C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD52 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000468231 RAD52-003 ENSG00000002016 9606 - 12:912489-949641 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TY CIL_0007TY_0001 VISTA 12:564896-1165613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 TAS double-strand break repair via homologous recombination
GO:0000730 TAS DNA recombinase assembly
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 IEA:TAS DNA repair
GO:0006302 TAS double-strand break repair
GO:0006310 IEA:IMP DNA recombination
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032269 Rad52-201 protein_coding Mus_musculus 0 370
ENSMUST00000161816 Rad52-003 retained_intron Mus_musculus 0 370
ENSMUST00000162461 Rad52-001 protein_coding Mus_musculus 0 370
ENSMUST00000161860 Rad52-008 processed_transcript Mus_musculus 0 241
ENSMUST00000159291 Rad52-007 processed_transcript Mus_musculus 0 233
ENSMUST00000162009 Rad52-010 processed_transcript Mus_musculus 0 231
ENSMUST00000161045 Rad52-002 nonsense_mediated_decay Mus_musculus 0 231
ENSMUST00000162255 Rad52-009 processed_transcript Mus_musculus 0 226
ENSMUST00000162205 Rad52-004 processed_transcript Mus_musculus 2e-19 102
ENSMUST00000160558 Rad52-012 retained_intron Mus_musculus 6e-19 100

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