C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nucleoporin 43
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161060 Nup43-004 ENSMUSG00000040034 10090 + 10:7670755-7675254 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLiverLungENSMUST00000161060
Transcript ID Colon Heart Liver Lung
ENSMUST00000161060 0.919±0.00 0.467±0.00 0.607±0.00 0.650±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X2 CIL_0005X2_0002 CGP 10:7589800-7681136
CIL_00050T CIL_00050T_0002 CGP 10:7629373-7681136

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340413 NUP43-004 protein_coding Homo_sapiens 0 604
ENST00000367402 NUP43-002 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000403890 NUP43-005 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000505438 AC004069.1-001 processed_pseudogene Homo_sapiens 0 414

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