C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: predicted pseudogene 2541
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161209 Gm2541-001 ENSMUSG00000089698 10090 - 16:85553233-85553943 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverTestisENSMUST00000161209
Transcript ID Colon Liver Testis
ENSMUST00000161209 1.674±0.30 0.767±0.27 4.554±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000RE CIL_0000RE_0002 CGP 16:84954440-85553397
CIL_000335 CIL_000335_0002 CGP 16:85421533-85803113

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262177 DNAJB6-001 protein_coding Homo_sapiens 0 448
ENST00000413963 RP11-300I6.5-001 processed_pseudogene Homo_sapiens 0 307
ENST00000417758 DNAJB6-009 protein_coding Homo_sapiens 0 401
ENST00000429029 DNAJB6-002 protein_coding Homo_sapiens 0 416
ENST00000432257 RP4-763G1.1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000459889 DNAJB6-004 retained_intron Homo_sapiens 0 448
ENST00000465908 DNAJB6-017 processed_transcript Homo_sapiens 0 448
ENST00000487480 DNAJB6-005 retained_intron Homo_sapiens 0 416
ENST00000526843 RP11-676M6.1-001 processed_pseudogene Homo_sapiens 0 394

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