C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 28062
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161769 HNRNPU-001 ENSMUSG00000100725 10090 - 1:178323074-178337728 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000161769
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000161769 23.304±11.61 49.712±2.08 84.744±32.32 13.544±3.31 18.972±5.89 12.078±1.11 19.253±2.18 70.640±59.03 31.174±2.43 18.969±2.67 63.586±58.81 141.345±86.70 131.556±87.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283179 HNRNPU-002 protein_coding Homo_sapiens 0 2542
ENST00000366525 HNRNPU-004 retained_intron Homo_sapiens 0 2261
ENST00000440865 HNRNPU-003 protein_coding Homo_sapiens 0 1014
ENST00000444376 HNRNPU-001 protein_coding Homo_sapiens 0 3314
ENST00000465881 HNRNPU-005 retained_intron Homo_sapiens 0 342
ENST00000468690 HNRNPU-006 retained_intron Homo_sapiens 0 477
ENST00000475997 RP11-11N7.5-001 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000476241 HNRNPU-008 retained_intron Homo_sapiens 0 1053
ENST00000483966 HNRNPU-007 retained_intron Homo_sapiens 0 652
ENST00000554987 HNRNPUP1-001 processed_pseudogene Homo_sapiens 0 372

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