C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366525 HNRNPU-004 ENSG00000153187 9606 - 1:244854133-244861091 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungOvaryENST00000366525
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Ovary
ENST00000366525 4.298±0.00 4.625±0.00 18.115±0.00 14.458±0.00 3.209±0.00 5.479±0.00 16.481±0.00 17.187±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L4 CIL_0000L4_0002 CGP 1:244851166-245127164

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037748 Hnrnpu-001 protein_coding Mus_musculus 0 2887
ENSMUST00000161769 HNRNPU-001 nonsense_mediated_decay Mus_musculus 0 2261
ENSMUST00000146362 Hnrnpu-004 processed_transcript Mus_musculus 0 856
ENSMUST00000150825 Hnrnpu-003 retained_intron Mus_musculus 0 486
ENSMUST00000188044 HNRNPU-002 nonsense_mediated_decay Mus_musculus 0 433
ENSMUST00000162916 Hnrnpu-006 retained_intron Mus_musculus 0 351
ENSMUST00000189450 HNRNPU-003 nonsense_mediated_decay Mus_musculus 0 344

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