C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000283179 HNRNPU-002 ENSG00000153187 9606 - 1:244853388-244864471 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283179 88.209±0.00 69.740±0.00 5.872±0.00 18.002±10.97 70.285±0.00 45.936±36.42 22.653±20.33 42.749±35.09 25.615±6.53 45.229±0.00 35.131±30.58 130.334±56.56 120.640±62.99 183.730±66.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L4 CIL_0000L4_0002 CGP 1:244851166-245127164

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001649 IDA osteoblast differentiation
GO:0003677 IEA DNA binding
GO:0003723 TAS RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016301 IEA kinase activity
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0044822 IDA poly(A) RNA binding
GO:0070934 IMP CRD-mediated mRNA stabilization
GO:0070937 IDA CRD-mediated mRNA stability complex
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037748 Hnrnpu-001 protein_coding Mus_musculus 0 4204
ENSMUST00000161769 HNRNPU-001 nonsense_mediated_decay Mus_musculus 0 2542
ENSMUST00000146362 Hnrnpu-004 processed_transcript Mus_musculus 0 850
ENSMUST00000150825 Hnrnpu-003 retained_intron Mus_musculus 0 486
ENSMUST00000188044 HNRNPU-002 nonsense_mediated_decay Mus_musculus 0 433
ENSMUST00000162916 Hnrnpu-006 retained_intron Mus_musculus 0 351
ENSMUST00000189450 HNRNPU-003 nonsense_mediated_decay Mus_musculus 0 344
ENSMUST00000134291 Hnrnpu-002 retained_intron Mus_musculus 0 281

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