C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein (C3H2C3 type) 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161859 Rnf6-001 ENSMUSG00000029634 10090 - 5:146209192-146221555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000161859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000161859 5.729±1.50 8.508±1.63 8.007±1.21 3.182±1.89 4.162±1.05 4.781±1.88 4.253±1.72 9.178±1.27 4.700±1.08 7.363±1.61 6.745±1.12 4.986±2.45 4.306±2.39 8.948±3.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MF CIL_0004MF_0002 CGP 5:146209192-146302874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016605 IDA PML body
GO:0016874 IEA ligase activity
GO:0030424 IDA axon
GO:0030517 IGI negative regulation of axon extension
GO:0031965 IEA nuclear membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044314 ISS protein K27-linked ubiquitination
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0050681 ISS androgen receptor binding
GO:0060765 ISS regulation of androgen receptor signaling pathway
GO:0070936 IMP protein K48-linked ubiquitination
GO:0085020 ISS protein K6-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346166 RNF6-001 protein_coding Homo_sapiens 0 1482
ENST00000381570 RNF6-002 protein_coding Homo_sapiens 0 1482
ENST00000381588 RNF6-006 protein_coding Homo_sapiens 0 1482
ENST00000468480 RNF6-007 processed_transcript Homo_sapiens 0 383
ENST00000476347 RNF6-005 processed_transcript Homo_sapiens 0 255
ENST00000498039 RNF6-004 processed_transcript Homo_sapiens 0 403

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