C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger and AT hook domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162054 Zfat-001 ENSMUSG00000022335 10090 - 15:68083766-68258856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162054
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162054 0.593±0.16 1.164±0.22 0.475±0.00 0.312±0.00 1.053±0.45 1.112±0.25 0.589±0.01 0.901±0.05 0.230±0.11 0.994±0.51 0.228±0.00 2.010±0.98 1.067±0.26 0.803±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PT CIL_0004PT_0002 CGP 15:67102875-68258856
CIL_0004PU CIL_0004PU_0002 CGP 15:68083766-69093512

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0003677 IEA DNA binding
GO:0005634 IC nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0030097 IMP hemopoiesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0060712 IMP spongiotrophoblast layer development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109710 zfat-201 protein_coding Danio_rerio 0 361
ENSDART00000156351 zfat-001 protein_coding Danio_rerio 0 361
ENST00000377838 ZFAT-001 protein_coding Homo_sapiens 0 3476
ENST00000429442 ZFAT-005 protein_coding Homo_sapiens 0 3271
ENST00000517307 ZFAT-013 processed_transcript Homo_sapiens 0 970
ENST00000519827 ZFAT-012 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000520214 ZFAT-006 protein_coding Homo_sapiens 0 3271
ENST00000520356 ZFAT-009 protein_coding Homo_sapiens 0 3271
ENST00000520727 ZFAT-007 protein_coding Homo_sapiens 0 3271
ENST00000522257 ZFAT-016 protein_coding Homo_sapiens 0 534
ENST00000522974 ZFAT-008 retained_intron Homo_sapiens 0 2309
ENST00000523040 ZFAT-017 processed_transcript Homo_sapiens 0 267
ENST00000523243 ZFAT-002 nonsense_mediated_decay Homo_sapiens 0 3193
ENST00000523399 ZFAT-004 protein_coding Homo_sapiens 0 2737
ENST00000523924 ZFAT-003 nonsense_mediated_decay Homo_sapiens 0 3271

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