C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004PT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000008513-ENSG00000066827 CGP 9606 8:133454848-134713049
GeneTranscriptPositionBiotype
ENSG00000008513 (ST3GAL1)
ST3 beta-galactoside alpha-2,3-sialyltransferase 1 		ENST00000399640 (ST3GAL1-201) 133454848-133571940 protein_coding
ENST00000517668 (ST3GAL1-005) 133464931-133571925 protein_coding
ENST00000518298 (ST3GAL1-002) 133476029-133571888 processed_transcript
ENST00000519435 (ST3GAL1-006) 133476029-133570379 processed_transcript
ENST00000519924 (ST3GAL1-010) 133475877-133489700 protein_coding
ENST00000520020 (ST3GAL1-007) 133476143-133499421 processed_transcript
ENST00000521180 (ST3GAL1-001) 133454853-133571925 protein_coding
ENST00000521627 (ST3GAL1-014) 133488082-133489633 processed_transcript
ENST00000522204 (ST3GAL1-012) 133465642-133475934 retained_intron
ENST00000522285 (ST3GAL1-004) 133566982-133571746 processed_transcript
ENST00000522652 (ST3GAL1-003) 133458945-133571849 protein_coding
ENST00000522873 (ST3GAL1-013) 133476523-133571926 processed_transcript
ENST00000523634 (ST3GAL1-011) 133475809-133489640 protein_coding
ENST00000523854 (ST3GAL1-008) 133464778-133499383 protein_coding
ENST00000523855 (ST3GAL1-009) 133475884-133499361 protein_coding
ENSG00000066827 (ZFAT)
zinc finger and AT hook domain containing 		ENST00000377838 (ZFAT-001) 134477792-134713038 protein_coding
ENST00000429442 (ZFAT-005) 134477792-134696558 protein_coding
ENST00000517307 (ZFAT-013) 134512574-134594885 processed_transcript
ENST00000518191 (ZFAT-011) 134608841-134696556 protein_coding
ENST00000518408 (ZFAT-010) 134478025-134565671 retained_intron
ENST00000519827 (ZFAT-012) 134583951-134600668 nonsense_mediated_decay
ENST00000520214 (ZFAT-006) 134478025-134696554 protein_coding
ENST00000520356 (ZFAT-009) 134477788-134696554 protein_coding
ENST00000520727 (ZFAT-007) 134477792-134696554 protein_coding
ENST00000521673 (ZFAT-015) 134478222-134510182 protein_coding
ENST00000522257 (ZFAT-016) 134608740-134639880 protein_coding
ENST00000522723 (ZFAT-014) 134509701-134511082 processed_transcript
ENST00000522974 (ZFAT-008) 134597544-134696554 retained_intron
ENST00000523040 (ZFAT-017) 134602807-134637593 processed_transcript
ENST00000523243 (ZFAT-002) 134477792-134713049 nonsense_mediated_decay
ENST00000523399 (ZFAT-004) 134478393-134712962 protein_coding
ENST00000523924 (ZFAT-003) 134477792-134713038 nonsense_mediated_decay
ENSG00000248492 (ZFAT-AS1)
ZFAT antisense RNA 1 		ENST00000505776 (ZFAT-AS1-001) 134598071-134600689 antisense
ENSG00000253165 (CTD-2309H9.3)
 ENST00000517380 (CTD-2309H9.3-001) 133775551-133777352 lincRNA
ENSG00000253561 (CTD-2588J1.1)
 ENST00000517695 (CTD-2588J1.1-001) 133771409-133814537 lincRNA
ENSG00000253593 (RP11-157E21.1)
 ENST00000520149 (RP11-157E21.1-001) 133886496-133902407 lincRNA
ENSG00000253627 (RP11-513H8.1)
 ENST00000523317 (RP11-513H8.1-001) 134211865-134320447 lincRNA
ENSG00000253916 (CTD-2309H9.2)
 ENST00000523429 (CTD-2309H9.2-001) 133755845-133756646 processed_pseudogene
ENSG00000254313 (CTD-2309H9.4)
 ENST00000523552 (CTD-2309H9.4-001) 133786093-133786268 processed_pseudogene
ENSG00000261220 (RP11-629O1.2)
 ENST00000561761 (RP11-629O1.2-001) 133573183-133573861 lincRNA
ENSG00000271048 (CTD-2342N23.2)
 ENST00000605856 (CTD-2342N23.2-001) 134673131-134673512 processed_pseudogene
ENSG00000271240 (RP11-157E21.2)
 ENST00000605278 (RP11-157E21.2-001) 133962992-133963259 processed_pseudogene
ENSG00000276193 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000611670 (Metazoa_SRP.1-359) 133668420-133668701 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0004PT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000013846-ENSMUSG00000022335 CGP 10090 15:67102875-68258856
GeneTranscriptPositionBiotype
ENSMUSG00000013846 (St3gal1)
ST3 beta-galactoside alpha-2,3-sialyltransferase 1 		ENSMUST00000092640 (St3gal1-201) 67102875-67113992 protein_coding
ENSMUSG00000102069 (RP23-163N4.1)
RIKEN cDNA 1700012I11 gene 		ENSMUST00000187233 (RP23-163N4.1-001) 67226769-67377094 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004PT_0001ENSG00000008513ENST00000399640ENST00000521180ENST00000522652ENSG00000066827ENST00000377838ENST00000429442ENST00000517307ENST00000518408ENST00000520214ENST00000520727ENST00000521673ENST00000522257ENST00000522974ENST00000523243ENST00000523399ENST00000523924ENSG00000248492ENST00000505776ENSG00000253165ENST00000517380ENSG00000253561ENST00000517695ENSG00000253593ENST00000520149ENSG00000253627ENST00000523317ENSG00000253916ENST00000523429ENSG00000254313ENST00000523552ENSG00000261220ENST00000561761ENSG00000271048ENST00000605856ENSG00000271240ENST00000605278ENSG00000276193ENST00000611670CIL_0004PT_0002ENSMUSG00000013846ENSMUST00000092640ENSMUSG00000102069ENSMUST00000187233
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000008513 ENST00000399640 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.597±0.00 N/A N/A N/A N/A
ENST00000517668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521180 1.271±0.00 2.222±0.00 N/A 0.657±0.00 0.869±0.01 1.894±0.00 10.168±0.00 1.369±0.00 N/A N/A 0.851±0.00 2.959±2.62 3.837±0.30 0.210±0.00
ENST00000521627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522652 N/A N/A 2.494±0.00 N/A 1.303±0.00 0.942±0.00 2.910±0.00 8.603±0.00 3.394±0.00 N/A N/A 1.563±0.00 N/A N/A
ENST00000522873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000066827 ENST00000377838 N/A N/A N/A 0.668±0.00 0.811±0.00 0.355±0.00 0.859±0.00 N/A N/A N/A 0.459±0.00 0.602±0.45 12.247±0.00 1.714±0.00
ENST00000429442 N/A N/A 1.131±0.00 N/A N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A 5.038±0.00 N/A
ENST00000517307 N/A N/A N/A N/A N/A N/A N/A 0.877±0.00 N/A N/A N/A N/A N/A N/A
ENST00000518191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518408 N/A 1.448±0.00 N/A 1.136±0.00 8.611±0.00 N/A 0.567±0.00 0.459±0.00 0.565±0.00 N/A 1.731±1.03 1.712±0.69 30.761±10.40 5.409±1.30
ENST00000519827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520214 0.347±0.00 N/A N/A N/A N/A N/A N/A N/A 0.524±0.00 N/A N/A N/A 12.729±4.36 N/A
ENST00000520356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520727 N/A 1.085±0.00 N/A N/A 0.921±0.00 0.820±0.00 N/A N/A 0.121±0.00 N/A 0.872±0.00 N/A N/A N/A
ENST00000521673 N/A 3.398±0.00 N/A N/A 8.904±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522257 N/A N/A 8.959±0.00 1.399±0.00 N/A 2.142±0.00 0.869±0.00 N/A N/A N/A 1.844±0.00 2.052±0.00 N/A N/A
ENST00000522723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522974 N/A N/A 0.889±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A
ENST00000523040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.00 N/A 0.906±0.00
ENST00000523399 0.304±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.421±0.00 N/A 0.902±0.00 23.635±0.00 2.866±0.00
ENST00000523924 N/A N/A N/A 0.806±0.00 N/A 0.960±0.00 0.403±0.00 1.821±0.00 N/A 0.561±0.00 N/A N/A N/A 0.902±0.00
ENSG00000248492 ENST00000505776 N/A N/A N/A N/A N/A N/A N/A 1.024±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000253165 ENST00000517380 N/A 0.030±0.00 N/A 0.079±0.00 0.015±0.00 N/A N/A N/A 0.013±0.00 N/A N/A N/A 0.037±0.01 0.027±0.00
ENSG00000253561 ENST00000517695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.108±0.00
ENSG00000253593 ENST00000520149 N/A N/A N/A N/A N/A N/A N/A 0.351±0.00 N/A N/A N/A N/A N/A 0.085±0.00
ENSG00000253627 ENST00000523317 N/A N/A N/A N/A 0.393±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253916 ENST00000523429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00
ENSG00000254313 ENST00000523552 N/A N/A N/A 0.091±0.00 N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000261220 ENST00000561761 0.702±0.00 2.377±0.00 N/A 0.292±0.06 0.565±0.00 N/A 0.519±0.42 0.355±0.00 0.327±0.00 0.776±0.00 0.817±0.00 0.593±0.44 0.513±0.20 0.386±0.03
ENSG00000271048 ENST00000605856 N/A N/A 0.236±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.01 N/A
ENSG00000271240 ENST00000605278 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276193 ENST00000611670 N/A 0.188±0.00 N/A 0.278±0.00 N/A N/A 0.060±0.00 0.065±0.00 N/A 1.317±0.00 N/A N/A N/A 0.058±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000013846 ENSMUST00000092640 N/A N/A 5.394±0.00 1.782±0.61 20.604±0.00 3.720±1.70 4.025±0.00 4.345±0.00 4.074±3.59 18.977±3.79 N/A 6.197±3.92 5.332±4.10 0.486±0.26
ENSMUSG00000102069 ENSMUST00000187233 N/A N/A 0.056±0.05 0.008±0.00 N/A N/A N/A 0.040±0.00 0.008±0.00 0.066±0.01 N/A N/A N/A 0.410±0.10

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