C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 43
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162346 Nup43-003 ENSMUSG00000040034 10090 + 10:7667514-7668291 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000162346
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000162346 2.949±0.00 7.977±0.00 13.070±8.41 28.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X2 CIL_0005X2_0002 CGP 10:7589800-7681136
CIL_00050T CIL_00050T_0002 CGP 10:7629373-7681136

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340413 NUP43-004 protein_coding Homo_sapiens 0 291
ENST00000367402 NUP43-002 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000367404 NUP43-007 protein_coding Homo_sapiens 0 291
ENST00000403890 NUP43-005 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000463048 NUP43-003 processed_transcript Homo_sapiens 3e-40 169
ENST00000543637 NUP43-008 protein_coding Homo_sapiens 0 204

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