C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 123
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162355 Rnf123-004 ENSMUSG00000041528 10090 - 9:108051672-108079301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryTestisENSMUST00000162355
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Testis
ENSMUST00000162355 6.512±0.02 6.474±0.98 4.684±0.21 3.644±0.23 5.863±0.96 5.901±0.94 3.378±0.00 4.723±0.59 7.342±0.43 9.474±1.16 1.601±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GV CIL_0007GV_0002 CGP 9:108002501-108052801
CIL_0005NE CIL_0005NE_0003 CGP 9:108051534-108083346

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308375 GMPPB-002 protein_coding Homo_sapiens 2e-34 152
ENST00000327697 RNF123-001 protein_coding Homo_sapiens 0 4889
ENST00000432042 RNF123-002 protein_coding Homo_sapiens 0 2976
ENST00000433785 RNF123-007 protein_coding Homo_sapiens 0 1624
ENST00000443204 RNF123-009 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000444689 RNF123-012 nonsense_mediated_decay Homo_sapiens 0 516
ENST00000454491 RNF123-008 protein_coding Homo_sapiens 0 291
ENST00000457726 RNF123-003 nonsense_mediated_decay Homo_sapiens 0 3251
ENST00000469978 RNF123-011 retained_intron Homo_sapiens 0 667
ENST00000480687 GMPPB-001 protein_coding Homo_sapiens 4e-34 152
ENST00000486102 RNF123-005 retained_intron Homo_sapiens 0 2446
ENST00000487805 RNF123-006 retained_intron Homo_sapiens 0 1628
ENST00000498376 RNF123-014 retained_intron Homo_sapiens 0 274

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