C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD52 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162461 Rad52-001 ENSMUSG00000030166 10090 + 6:119902703-119922823 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000162461
Transcript ID Adipose Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000162461 2.502±0.24 2.218±0.29 2.101±0.70 2.183±0.42 1.466±0.10 2.544±1.33 2.001±0.00 1.015±0.34 3.990±1.06 3.334±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TY CIL_0007TY_0002 VISTA 6:119665436-120266145
CIL_0008AW CIL_0008AW_0002 VISTA 6:119874234-120475208
CIL_0006C0 CIL_0006C0_0002 CGP 6:119902698-120038672

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IDA double-strand break repair via homologous recombination
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006310 ISS DNA recombination
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228345 RAD52-014 retained_intron Homo_sapiens 0 270
ENST00000358495 RAD52-001 protein_coding Homo_sapiens 0 708
ENST00000397230 RAD52-007 protein_coding Homo_sapiens 0 370
ENST00000430095 RAD52-008 protein_coding Homo_sapiens 0 708
ENST00000461568 RAD52-002 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000463750 RAD52-004 retained_intron Homo_sapiens 0 440
ENST00000468231 RAD52-003 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000481052 RAD52-005 retained_intron Homo_sapiens 0 346
ENST00000488642 RAD52-006 retained_intron Homo_sapiens 0 370
ENST00000536177 RAD52-017 protein_coding Homo_sapiens 0 708
ENST00000539046 RAD52-201 protein_coding Homo_sapiens 0 370
ENST00000541619 RAD52-013 protein_coding Homo_sapiens 0 270
ENST00000542584 RAD52-010 processed_transcript Homo_sapiens 0 580
ENST00000542785 RAD52-018 protein_coding Homo_sapiens 0 411
ENST00000543912 RAD52-009 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000544742 RAD52-012 protein_coding Homo_sapiens 0 270
ENST00000545564 RAD52-202 protein_coding Homo_sapiens 0 484
ENST00000545967 RAD52-011 processed_transcript Homo_sapiens 0 355

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