C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroglobulin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163495 Tg-004 ENSMUSG00000053469 10090 + 15:66688836-66850607 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000163495
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163495 0.004±0.00 0.045±0.01 0.017±0.00 0.015±0.00 0.067±0.02 0.059±0.00 0.016±0.00 0.225±0.10 0.020±0.00 0.097±0.00 0.015±0.00 0.528±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0002 VISTA 15:66524301-67127162
CIL_0004PY CIL_0004PY_0002 CGP 15:66577572-66850721
CIL_0004PV CIL_0004PV_0002 CGP 15:66670753-66850721

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005615 IDA extracellular space
GO:0006590 IBA thyroid hormone generation
GO:0015705 IMP iodide transport
GO:0031641 IMP regulation of myelination
GO:0042403 IMP thyroid hormone metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220616 TG-001 protein_coding Homo_sapiens 0 3210
ENST00000519178 TG-003 protein_coding Homo_sapiens 0 2246
ENST00000519543 TG-005 protein_coding Homo_sapiens 0 1531
ENST00000521107 TG-007 protein_coding Homo_sapiens 0 220
ENST00000522809 TG-008 retained_intron Homo_sapiens 0 411
ENST00000522996 TG-009 retained_intron Homo_sapiens 0 355
ENST00000523756 TG-002 nonsense_mediated_decay Homo_sapiens 0 3326

Loading