C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jade family PHD finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163764 Jade1-202 ENSMUSG00000025764 10090 + 3:41563383-41616862 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163764
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163764 4.699±0.69 5.782±2.68 5.082±0.04 1.882±0.78 3.750±1.96 3.682±1.57 2.916±0.38 5.674±0.75 2.150±1.04 3.818±0.60 2.674±0.96 5.120±0.75 18.076±0.00 1.045±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001N CIL_00001N_0002 CGP 3:41066326-41616862
CIL_00001M CIL_00001M_0002 CGP 3:41555734-41742514

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000123 ISS histone acetyltransferase complex
GO:0001105 IEA RNA polymerase II transcription coactivator activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0043966 ISS histone H3 acetylation
GO:0043981 ISS histone H4-K5 acetylation
GO:0043982 ISS histone H4-K8 acetylation
GO:0043983 ISS histone H4-K12 acetylation
GO:0045171 IEA intercellular bridge
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:2000134 IEA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121706 jade1-201 protein_coding Danio_rerio 0 483
ENSDART00000042060 jade1-001 protein_coding Danio_rerio 0 483
ENSDART00000143852 jade1-003 retained_intron Danio_rerio 0 246
ENST00000226319 JADE1-201 protein_coding Homo_sapiens 0 3432
ENST00000413543 JADE1-001 protein_coding Homo_sapiens 0 2058
ENST00000452328 JADE1-003 protein_coding Homo_sapiens 0 2885
ENST00000503565 SCLT1-009 processed_transcript Homo_sapiens 0.00000000000002 84
ENST00000503785 JADE1-007 protein_coding Homo_sapiens 0 579
ENST00000504089 JADE1-005 protein_coding Homo_sapiens 0 597
ENST00000507833 JADE1-009 protein_coding Homo_sapiens 0 584
ENST00000508997 JADE1-010 protein_coding Homo_sapiens 0 555
ENST00000510308 JADE1-006 protein_coding Homo_sapiens 0 623
ENST00000511647 JADE1-002 protein_coding Homo_sapiens 0 2085
ENST00000511925 JADE1-011 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000512960 JADE1-004 protein_coding Homo_sapiens 0 3188
ENST00000514740 JADE1-008 protein_coding Homo_sapiens 7e-32 141
ENST00000610919 JADE1-202 protein_coding Homo_sapiens 0 3400
ENST00000611140 JADE1-203 protein_coding Homo_sapiens 0 3402

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