C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif, single stranded interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164018 Rbms3-012 ENSMUSG00000039607 10090 - 9:116578025-117629913 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyOvaryTestisENSMUST00000164018
Transcript ID Adipose Breast Colon Kidney Ovary Testis
ENSMUST00000164018 2.865±0.00 2.423±0.00 2.456±0.51 2.201±0.00 5.638±0.90 0.177±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028F CIL_00028F_0002 CGP 9:116087698-117629913

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005737 IEA cytoplasm
GO:0045727 IDA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273139 RBMS3-007 protein_coding Homo_sapiens 0 1020
ENST00000383766 RBMS3-005 protein_coding Homo_sapiens 0 1629
ENST00000383767 RBMS3-001 protein_coding Homo_sapiens 0 1020
ENST00000434693 RBMS3-002 protein_coding Homo_sapiens 0 1020
ENST00000445033 RBMS3-004 protein_coding Homo_sapiens 0 867
ENST00000452462 RBMS3-008 protein_coding Homo_sapiens 0 1020
ENST00000456853 RBMS3-006 protein_coding Homo_sapiens 0 798
ENST00000471426 RBMS3-009 retained_intron Homo_sapiens 9.99967e-42 174
ENST00000473799 RBMS3-014 processed_transcript Homo_sapiens 0 446
ENST00000497205 RBMS3-011 retained_intron Homo_sapiens 0 448
ENST00000497274 RBMS3-015 processed_transcript Homo_sapiens 0 287
ENST00000497319 RBMS3-013 processed_transcript Homo_sapiens 0 462

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