C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Indian hedgehog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164097 Ihh-001 ENSMUSG00000006538 10090 - 1:74945315-74951672 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164097
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164097 6.166±6.10 0.077±0.05 0.084±0.00 0.164±0.04 0.066±0.03 59.281±6.59 0.045±0.03 13.796±3.69 1.630±1.32 0.267±0.13 0.058±0.03 31.876±12.96 2.259±1.97 0.206±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EC CIL_0006EC_0002 CGP 1:74902071-74951672
CIL_0001HY CIL_0001HY_0003 CGP 1:74945315-75125200

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IMP ossification
GO:0001569 IMP patterning of blood vessels
GO:0001649 IMP osteoblast differentiation
GO:0001701 IMP in utero embryonic development
GO:0001708 IMP cell fate specification
GO:0001763 IMP morphogenesis of a branching structure
GO:0001944 IMP vasculature development
GO:0001947 IMP heart looping
GO:0002053 IMP positive regulation of mesenchymal cell proliferation
GO:0003382 IMP epithelial cell morphogenesis
GO:0003406 IMP retinal pigment epithelium development
GO:0005113 IPI patched binding
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0005886 IEA plasma membrane
GO:0006029 IGI proteoglycan metabolic process
GO:0006508 IEA proteolysis
GO:0007224 IGI smoothened signaling pathway
GO:0007267 IEA cell-cell signaling
GO:0007389 IMP pattern specification process
GO:0008233 IEA peptidase activity
GO:0008284 IMP positive regulation of cell proliferation
GO:0009880 IMP embryonic pattern specification
GO:0009968 IEA negative regulation of signal transduction
GO:0016539 IEA intein-mediated protein splicing
GO:0030154 IDA cell differentiation
GO:0030704 IMP vitelline membrane formation
GO:0031012 IDA extracellular matrix
GO:0031016 IMP pancreas development
GO:0032332 IEA positive regulation of chondrocyte differentiation
GO:0032355 IEA response to estradiol
GO:0032967 IDA positive regulation of collagen biosynthetic process
GO:0033085 IMP negative regulation of T cell differentiation in thymus
GO:0033088 IMP negative regulation of immature T cell proliferation in thymus
GO:0033089 IMP positive regulation of T cell differentiation in thymus
GO:0035264 IMP multicellular organism growth
GO:0035988 IMP chondrocyte proliferation
GO:0040008 IGI regulation of growth
GO:0043010 IMP camera-type eye development
GO:0043066 IEA negative regulation of apoptotic process
GO:0045453 IDA bone resorption
GO:0045595 IEA regulation of cell differentiation
GO:0045596 IMP negative regulation of cell differentiation
GO:0045880 IMP positive regulation of smoothened signaling pathway
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046638 IMP positive regulation of alpha-beta T cell differentiation
GO:0046639 IMP negative regulation of alpha-beta T cell differentiation
GO:0048074 IMP negative regulation of eye pigmentation
GO:0048469 IMP cell maturation
GO:0048557 IMP embryonic digestive tract morphogenesis
GO:0048596 IMP embryonic camera-type eye morphogenesis
GO:0048666 IMP neuron development
GO:0048745 IMP smooth muscle tissue development
GO:0050679 IEA positive regulation of epithelial cell proliferation
GO:0051216 IMP cartilage development
GO:0060135 IEA maternal process involved in female pregnancy
GO:0060220 IMP camera-type eye photoreceptor cell fate commitment
GO:0060323 IMP head morphogenesis
GO:0061053 IMP somite development
GO:0072498 IMP embryonic skeletal joint development
GO:0090136 IMP epithelial cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295731 IHH-001 protein_coding Homo_sapiens 0 1602

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