C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 43
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164506 Ccdc43-201 ENSMUSG00000020925 10090 - 11:102684688-102697734 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverOvaryENSMUST00000164506
Transcript ID Adrenal Breast Colon Heart Kidney Liver Ovary
ENSMUST00000164506 0.795±0.02 0.700±0.00 1.109±0.00 0.662±0.00 0.784±0.28 1.036±0.27 0.473±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0003CO CIL_0003CO_0002 CGP 11:102663716-102697782

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315286 CCDC43-001 protein_coding Homo_sapiens 0 797
ENST00000457422 CCDC43-003 protein_coding Homo_sapiens 0 333
ENST00000472403 C17orf104-003 nonsense_mediated_decay Homo_sapiens 7e-33 147
ENST00000588210 CCDC43-002 protein_coding Homo_sapiens 0 767
ENST00000588805 C17orf104-007 processed_transcript Homo_sapiens 4e-34 148

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