C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003CO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000180336-ENSG00000180336 CGP 9606 17:44656404-44690308
GeneTranscriptPositionBiotype
ENSG00000180329 (CCDC43)
coiled-coil domain containing 43 		ENST00000315286 (CCDC43-001) 44677458-44689762 protein_coding
ENST00000457422 (CCDC43-003) 44677440-44689779 protein_coding
ENST00000588210 (CCDC43-002) 44677483-44689763 protein_coding
ENST00000588687 (CCDC43-005) 44673069-44689725 protein_coding
ENST00000592333 (CCDC43-004) 44681731-44689745 retained_intron
ENSG00000267160 (RP11-1072C15.4)
 ENST00000591628 (RP11-1072C15.4-001) 44673689-44676257 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003CO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051455-ENSMUSG00000020925 CGP 10090 11:102663716-102697782
GeneTranscriptPositionBiotype
ENSMUSG00000020925 (Ccdc43)
coiled-coil domain containing 43 		ENSMUST00000092569 (Ccdc43-001) 102684686-102697782 protein_coding
ENSMUST00000124869 (Ccdc43-003) 102686340-102697536 processed_transcript
ENSMUST00000138147 (Ccdc43-004) 102689710-102697670 processed_transcript
ENSMUST00000153157 (Ccdc43-002) 102688319-102697734 processed_transcript
ENSMUST00000164506 (Ccdc43-201) 102684688-102697734 protein_coding
ENSMUSG00000051455 (Gm1564)
predicted gene 1564 		ENSMUST00000100378 (Gm1564-001) 102665588-102682237 protein_coding
ENSMUST00000155813 (Gm1564-002) 102665623-102674124 processed_transcript
ENSMUST00000156590 (Gm1564-003) 102663716-102675308 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003CO_0001ENSG00000180329ENST00000315286ENST00000457422ENST00000588210ENST00000588687ENST00000592333ENSG00000267160ENST00000591628CIL_0003CO_0002ENSMUSG00000020925ENSMUST00000092569ENSMUST00000124869ENSMUST00000138147ENSMUST00000153157ENSMUST00000164506ENSMUSG00000051455ENSMUST00000100378ENSMUST00000155813ENSMUST00000156590
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003CO_0001ENSG00000180329ENST00000315286ENST00000457422ENST00000588210ENST00000592333ENSG00000267160ENST00000591628CIL_0003CO_0002ENSMUSG00000020925ENSMUST00000092569ENSMUST00000124869ENSMUST00000138147ENSMUST00000153157ENSMUST00000164506ENSMUSG00000051455ENSMUST00000100378ENSMUST00000155813ENSMUST00000156590
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000180329 ENST00000315286 4.817±0.00 4.964±0.00 0.906±0.00 6.118±2.51 3.582±1.19 3.809±0.25 4.008±0.85 2.215±1.91 1.540±0.86 4.338±0.00 6.476±5.14 5.420±1.62 4.130±0.55 7.595±0.00
ENST00000457422 1.455±0.00 1.873±0.00 1.259±0.00 2.173±0.33 1.689±0.29 N/A 3.164±0.00 N/A 1.222±0.59 1.263±0.00 4.014±1.05 2.658±1.87 1.938±1.58 N/A
ENST00000588210 N/A N/A N/A N/A N/A 1.322±0.00 N/A N/A N/A 0.977±0.00 N/A 4.793±0.00 2.058±0.00 N/A
ENST00000588687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592333 N/A N/A N/A N/A N/A N/A N/A 0.945±0.00 N/A N/A N/A 4.917±0.00 N/A N/A
ENSG00000267160 ENST00000591628 N/A N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A 13.144±2.79
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020925 ENSMUST00000092569 0.999±0.09 N/A 5.083±0.34 4.543±1.55 0.834±0.28 0.529±0.09 1.190±0.35 0.944±0.42 5.470±1.21 0.796±0.05 23.520±1.18 3.120±2.71 5.160±1.11 0.829±0.53
ENSMUST00000124869 N/A N/A N/A 23.154±0.00 N/A N/A N/A N/A N/A N/A N/A 36.407±0.00 27.993±1.14 30.579±0.00
ENSMUST00000138147 N/A N/A N/A N/A N/A N/A N/A N/A 0.819±0.00 N/A N/A 0.780±0.07 N/A 0.951±0.00
ENSMUST00000153157 3.230±0.46 3.043±0.90 2.510±0.00 2.206±0.00 3.773±1.80 2.018±0.33 2.092±0.21 2.522±0.46 2.672±0.46 1.962±0.47 N/A 2.602±1.26 3.288±1.68 2.956±0.59
ENSMUST00000164506 N/A 0.795±0.02 N/A N/A 0.700±0.00 1.109±0.00 0.662±0.00 0.784±0.28 1.036±0.27 N/A N/A 0.473±0.18 N/A N/A
ENSMUSG00000051455 ENSMUST00000100378 0.031±0.00 0.083±0.05 N/A 0.017±0.00 0.027±0.01 0.045±0.01 0.024±0.01 0.032±0.00 0.023±0.01 0.044±0.01 0.016±0.01 0.055±0.03 0.020±0.01 7.675±0.37
ENSMUST00000155813 N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A 0.080±0.04 20.343±10.23
ENSMUST00000156590 N/A 0.159±0.05 0.024±0.00 0.017±0.00 N/A N/A 0.006±0.00 N/A 0.009±0.00 N/A 0.026±0.02 N/A N/A N/A

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