C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-myc downstream regulated gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164675 Ndrg1-004 ENSMUSG00000005125 10090 - 15:66942012-66969639 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0002 VISTA 15:66524301-67127162
CIL_00094T CIL_00094T_0002 VISTA 15:66842033-67443636
CIL_0006FT CIL_0006FT_0003 CGP 15:66891320-66969640
CIL_0004PW CIL_0004PW_0002 CGP 15:66929321-67113992

Gene Ontology

GO IDEvidence TypeGO Description
GO:0045576 IDA mast cell activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323851 NDRG1-002 protein_coding Homo_sapiens 0 327
ENST00000414097 NDRG1-001 protein_coding Homo_sapiens 0 327
ENST00000517331 NDRG1-023 processed_transcript Homo_sapiens 0 318
ENST00000517599 NDRG1-005 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000517745 NDRG1-024 retained_intron Homo_sapiens 1e-23 113
ENST00000518010 NDRG1-025 processed_transcript Homo_sapiens 2e-22 110
ENST00000518094 NDRG1-022 retained_intron Homo_sapiens 1e-23 113
ENST00000518480 NDRG1-017 protein_coding Homo_sapiens 0 200
ENST00000519228 NDRG1-012 protein_coding Homo_sapiens 0 195
ENST00000519580 NDRG1-014 protein_coding Homo_sapiens 0 189
ENST00000520230 NDRG1-010 protein_coding Homo_sapiens 0 243
ENST00000520943 NDRG1-011 protein_coding Homo_sapiens 2e-37 159
ENST00000521544 NDRG1-016 protein_coding Homo_sapiens 6e-24 115
ENST00000522377 NDRG1-026 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000522476 NDRG1-004 protein_coding Homo_sapiens 0 327
ENST00000522890 NDRG1-013 protein_coding Homo_sapiens 0 189
ENST00000537882 NDRG1-201 protein_coding Homo_sapiens 0 327

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