C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: N-myc downstream regulated gene 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005125 Ndrg1 10090 - 15:66929321-66969640 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005256 Ndrg1-001 66929321-66969640 protein_coding
  ENSMUST00000163496 Ndrg1-010 66943136-66967940 protein_coding
  ENSMUST00000164070 Ndrg1-006 66946537-66969640 protein_coding
  ENSMUST00000164675 Ndrg1-004 66942012-66969639 nonsense_mediated_decay
  ENSMUST00000165966 Ndrg1-007 66930866-66934469 retained_intron
  ENSMUST00000166420 Ndrg1-009 66931077-66969639 protein_coding
  ENSMUST00000167817 Ndrg1-013 66943079-66948479 protein_coding
  ENSMUST00000168542 Ndrg1-008 66943074-66969639 nonsense_mediated_decay
  ENSMUST00000168979 Ndrg1-003 66943079-66967925 protein_coding
  ENSMUST00000170903 Ndrg1-011 66943129-66969616 protein_coding
  ENSMUST00000171266 Ndrg1-005 66943097-66969595 nonsense_mediated_decay
  ENSMUST00000171569 Ndrg1-002 66934158-66969639 retained_intron
  ENSMUST00000172447 Ndrg1-012 66943092-66969616 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005256ENSMUST00000168979ENSMUST00000171569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005256 8.598±4.88 8.689±5.40 21.621±1.66 6.281±4.37 5.381±0.82 9.232±0.00 11.361±0.26 238.069±124.61 25.150±32.35 1.710±0.00 4.836±1.91 9.686±4.19 77.375±56.08 0.674±0.11
ENSMUST00000168979 N/A 19.842±4.28 N/A N/A 30.017±9.27 N/A 12.603±2.11 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.876±0.25 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0002 VISTA 15:66524301-67127162
CIL_00094T CIL_00094T_0002 VISTA 15:66842033-67443636
CIL_0006FT CIL_0006FT_0003 CGP 15:66891320-66969640
CIL_0004PW CIL_0004PW_0002 CGP 15:66929321-67113992

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IEA centrosome
GO:0005874 IEA microtubule
GO:0005886 IEA plasma membrane
GO:0005913 IEA cell-cell adherens junction
GO:0008017 IEA microtubule binding
GO:0015630 IEA microtubule cytoskeleton
GO:0017137 IEA Rab GTPase binding
GO:0030330 IEA DNA damage response, signal transduction by p53 class mediator
GO:0032287 IMP peripheral nervous system myelin maintenance
GO:0043015 IEA gamma-tubulin binding
GO:0045296 IEA cadherin binding
GO:0045576 IDA mast cell activation
GO:0048471 IEA perinuclear region of cytoplasm
GO:0055038 IEA recycling endosome membrane
GO:0070062 IEA extracellular vesicular exosome
GO:0071456 IEA cellular response to hypoxia
GO:0090232 IEA positive regulation of spindle checkpoint

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010420 ndrg1b N-myc downstream regulated gene 1b protein_coding Danio_rerio
ENSDARG00000032849 ndrg1a N-myc downstream regulated gene 1a protein_coding Danio_rerio
ENSG00000104419 NDRG1 N-myc downstream regulated 1 protein_coding Homo_sapiens

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