C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: N-myc downstream regulated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518094 NDRG1-022 ENSG00000104419 9606 - 8:133259095-133262257 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0001 VISTA 8:132792656-133394938
CIL_0006FT CIL_0006FT_0002 CGP 8:133191039-133302022
CIL_00094T CIL_00094T_0001 VISTA 8:133226403-133828417
CIL_0004PW CIL_0004PW_0001 CGP 8:133237171-133571940

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163496 Ndrg1-010 protein_coding Mus_musculus 0 228
ENSMUST00000170903 Ndrg1-011 protein_coding Mus_musculus 0 228
ENSMUST00000171266 Ndrg1-005 nonsense_mediated_decay Mus_musculus 0 228
ENSMUST00000168979 Ndrg1-003 protein_coding Mus_musculus 0 228
ENSMUST00000171569 Ndrg1-002 retained_intron Mus_musculus 0 228
ENSMUST00000005256 Ndrg1-001 protein_coding Mus_musculus 0 228
ENSMUST00000164675 Ndrg1-004 nonsense_mediated_decay Mus_musculus 1e-23 113
ENSMUST00000168542 Ndrg1-008 nonsense_mediated_decay Mus_musculus 2e-20 102
ENSMUST00000172447 Ndrg1-012 nonsense_mediated_decay Mus_musculus 3e-19 99

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