C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-myc downstream regulated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323851 NDRG1-002 ENSG00000104419 9606 - 8:133237171-133297237 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323851
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323851 72.334±0.00 33.866±0.00 9.158±0.00 169.357±0.00 37.191±29.16 69.977±61.89 20.872±0.00 67.221±66.73 8.418±0.67 93.174±80.00 20.145±0.00 73.670±39.05 91.075±38.24 27.563±12.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0001 VISTA 8:132792656-133394938
CIL_0006FT CIL_0006FT_0002 CGP 8:133191039-133302022
CIL_00094T CIL_00094T_0001 VISTA 8:133226403-133828417
CIL_0004PW CIL_0004PW_0001 CGP 8:133237171-133571940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005874 IDA microtubule
GO:0005886 IDA plasma membrane
GO:0005913 IDA cell-cell adherens junction
GO:0008017 IDA microtubule binding
GO:0008219 IEA cell death
GO:0010038 TAS response to metal ion
GO:0015630 IDA microtubule cytoskeleton
GO:0017137 IDA Rab GTPase binding
GO:0030330 IEP DNA damage response, signal transduction by p53 class mediator
GO:0043015 IDA gamma-tubulin binding
GO:0045296 IDA cadherin binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0055038 IDA recycling endosome membrane
GO:0070062 IDA extracellular vesicular exosome
GO:0071456 IEP cellular response to hypoxia
GO:0090232 IDA positive regulation of spindle checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005256 Ndrg1-001 protein_coding Mus_musculus 0 1304
ENSMUST00000171569 Ndrg1-002 retained_intron Mus_musculus 0 924
ENSMUST00000168979 Ndrg1-003 protein_coding Mus_musculus 0 577
ENSMUST00000170903 Ndrg1-011 protein_coding Mus_musculus 0 529
ENSMUST00000163496 Ndrg1-010 protein_coding Mus_musculus 0 521
ENSMUST00000171266 Ndrg1-005 nonsense_mediated_decay Mus_musculus 0 440
ENSMUST00000165966 Ndrg1-007 retained_intron Mus_musculus 0 348
ENSMUST00000164675 Ndrg1-004 nonsense_mediated_decay Mus_musculus 0 327
ENSMUST00000168542 Ndrg1-008 nonsense_mediated_decay Mus_musculus 0 231
ENSMUST00000172447 Ndrg1-012 nonsense_mediated_decay Mus_musculus 0 196

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