C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming growth factor beta 1 induced transcript 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164710 Tgfb1i1-001 ENSMUSG00000030782 10090 + 7:128246812-128253711 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164710
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164710 4.798±0.29 2.174±0.58 20.345±6.81 1.099±0.57 3.082±0.47 6.819±0.46 2.778±0.79 2.079±0.62 0.550±0.35 14.453±0.65 0.694±0.13 8.168±0.00 1.215±0.77 0.348±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035P CIL_00035P_0002 CGP 7:128237357-128253712
CIL_000708 CIL_000708_0002 CGP 7:128246812-128272430

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016331 IMP morphogenesis of embryonic epithelium
GO:0030855 IGI epithelial cell differentiation
GO:0045165 IGI cell fate commitment
GO:0045599 IGI negative regulation of fat cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361773 TGFB1I1-201 protein_coding Homo_sapiens 0 1439
ENST00000394858 TGFB1I1-002 protein_coding Homo_sapiens 0 1439
ENST00000394863 TGFB1I1-001 protein_coding Homo_sapiens 0 1439
ENST00000561785 TGFB1I1-017 retained_intron Homo_sapiens 4.06377e-44 182
ENST00000562165 TGFB1I1-018 retained_intron Homo_sapiens 0 231
ENST00000562566 TGFB1I1-015 protein_coding Homo_sapiens 0 228
ENST00000563712 TGFB1I1-007 nonsense_mediated_decay Homo_sapiens 0 1218
ENST00000564176 TGFB1I1-003 retained_intron Homo_sapiens 0 566
ENST00000564804 TGFB1I1-005 nonsense_mediated_decay Homo_sapiens 0 1140
ENST00000565360 TGFB1I1-020 protein_coding Homo_sapiens 0 568
ENST00000565454 TGFB1I1-012 protein_coding Homo_sapiens 0 449
ENST00000567066 TGFB1I1-006 nonsense_mediated_decay Homo_sapiens 0 1563
ENST00000567524 TGFB1I1-016 retained_intron Homo_sapiens 3e-26 122
ENST00000567607 TGFB1I1-004 protein_coding Homo_sapiens 0 1439
ENST00000568142 TGFB1I1-019 retained_intron Homo_sapiens 0 616
ENST00000569254 TGFB1I1-014 retained_intron Homo_sapiens 0 315
ENST00000569703 TGFB1I1-021 retained_intron Homo_sapiens 0 828

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