C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming growth factor beta 1 induced transcript 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394863 TGFB1I1-001 ENSG00000140682 9606 + 16:31472059-31477958 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000394863
Transcript ID Adipose Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000394863 9.331±0.00 14.801±0.00 54.727±0.00 4.672±0.00 3.317±0.00 23.410±0.00 4.797±0.00 40.242±38.54 9.965±2.18 33.457±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090H CIL_00090H_0001 VISTA 16:31421736-32023283
CIL_00035P CIL_00035P_0001 CGP 16:31458080-31477960
CIL_000708 CIL_000708_0001 CGP 16:31471585-31490860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007155 TAS cell adhesion
GO:0008270 IEA zinc ion binding
GO:0008285 TAS negative regulation of cell proliferation
GO:0009408 IEA response to heat
GO:0010718 IDA positive regulation of epithelial to mesenchymal transition
GO:0016055 IEA Wnt signaling pathway
GO:0016331 IEA morphogenesis of embryonic epithelium
GO:0030511 IDA positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030512 IDA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030521 NAS androgen receptor signaling pathway
GO:0030579 IDA ubiquitin-dependent SMAD protein catabolic process
GO:0030855 IEA epithelial cell differentiation
GO:0031012 IDA extracellular matrix
GO:0045165 IEA cell fate commitment
GO:0045599 IEA negative regulation of fat cell differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048495 IPI Roundabout binding
GO:0050681 IPI androgen receptor binding
GO:0070411 IPI I-SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167965 Tgfb1i1-003 protein_coding Mus_musculus 0 1613
ENSMUST00000070656 Tgfb1i1-002 protein_coding Mus_musculus 0 1576
ENSMUST00000163609 Tgfb1i1-005 protein_coding Mus_musculus 0 1441
ENSMUST00000164710 Tgfb1i1-001 protein_coding Mus_musculus 0 1439
ENSMUST00000165667 Tgfb1i1-010 protein_coding Mus_musculus 0 1301
ENSMUST00000166755 Tgfb1i1-008 retained_intron Mus_musculus 0 1282
ENSMUST00000169919 Tgfb1i1-004 nonsense_mediated_decay Mus_musculus 0 1216
ENSMUST00000171888 Tgfb1i1-009 retained_intron Mus_musculus 0 1214
ENSMUST00000170115 Tgfb1i1-011 nonsense_mediated_decay Mus_musculus 0 1140
ENSMUST00000163553 Tgfb1i1-007 retained_intron Mus_musculus 0 1140
ENSMUST00000168825 Tgfb1i1-006 protein_coding Mus_musculus 0 1140

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