C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming growth factor beta 1 induced transcript 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564804 TGFB1I1-005 ENSG00000140682 9606 + 16:31473440-31477906 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonOvaryPlacentaTestisENST00000564804
Transcript ID Adipose Adrenal Breast Colon Ovary Placenta Testis
ENST00000564804 8.215±0.00 16.347±0.00 14.375±0.00 17.977±0.00 4.299±0.00 15.181±0.00 2.201±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090H CIL_00090H_0001 VISTA 16:31421736-32023283
CIL_00035P CIL_00035P_0001 CGP 16:31458080-31477960
CIL_000708 CIL_000708_0001 CGP 16:31471585-31490860

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170115 Tgfb1i1-011 nonsense_mediated_decay Mus_musculus 0 1507
ENSMUST00000163553 Tgfb1i1-007 retained_intron Mus_musculus 0 1149
ENSMUST00000168825 Tgfb1i1-006 protein_coding Mus_musculus 0 1149
ENSMUST00000165667 Tgfb1i1-010 protein_coding Mus_musculus 0 1140
ENSMUST00000171888 Tgfb1i1-009 retained_intron Mus_musculus 0 1140
ENSMUST00000166755 Tgfb1i1-008 retained_intron Mus_musculus 0 1140
ENSMUST00000163609 Tgfb1i1-005 protein_coding Mus_musculus 0 1140
ENSMUST00000167965 Tgfb1i1-003 protein_coding Mus_musculus 0 1140
ENSMUST00000169919 Tgfb1i1-004 nonsense_mediated_decay Mus_musculus 0 1140
ENSMUST00000070656 Tgfb1i1-002 protein_coding Mus_musculus 0 1140
ENSMUST00000164710 Tgfb1i1-001 protein_coding Mus_musculus 0 1140

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