C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165196 Rhbg-002 ENSMUSG00000001417 10090 - 3:88243380-88287210 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverLungOvaryPlacentaTestisENSMUST00000165196
Transcript ID Adipose Adrenal Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000165196 0.662±0.00 0.516±0.12 1.020±0.00 0.589±0.00 2.124±1.50 2.920±0.00 0.925±0.55 0.253±0.00 1.117±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005887 ISS integral component of plasma membrane
GO:0008519 IEA ammonium transmembrane transporter activity
GO:0072488 IEA ammonium transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000451864 RHBG-006 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000537040 RHBG-001 protein_coding Homo_sapiens 0 1256
ENST00000612897 RHBG-003 nonsense_mediated_decay Homo_sapiens 0 1262
ENST00000613460 RHBG-002 nonsense_mediated_decay Homo_sapiens 0 1262
ENST00000618120 RHBG-004 retained_intron Homo_sapiens 0 989
ENST00000620376 RHBG-009 nonsense_mediated_decay Homo_sapiens 0 388

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