C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rac GTPase-activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165745 Racgap1-014 ENSMUSG00000023015 10090 - 15:99626100-99632804 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalKidneyENSMUST00000165745
Transcript ID Adrenal Kidney
ENSMUST00000165745 0.970±0.00 0.716±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0002 VISTA 15:99507076-100109694
CIL_0008CC CIL_0008CC_0002 VISTA 15:99507743-100109214
CIL_00071X CIL_00071X_0002 CGP 15:99601400-99651656
CIL_00071Y CIL_00071Y_0002 CGP 15:99620496-99701127

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312377 RACGAP1-001 protein_coding Homo_sapiens 0 597
ENST00000427314 RACGAP1-004 protein_coding Homo_sapiens 0 597
ENST00000454520 RACGAP1-005 protein_coding Homo_sapiens 0 597
ENST00000547061 RACGAP1-015 processed_transcript Homo_sapiens 0 490
ENST00000547905 RACGAP1-003 protein_coding Homo_sapiens 0 597
ENST00000548158 RACGAP1-016 retained_intron Homo_sapiens 0 191
ENST00000548320 RACGAP1-013 protein_coding Homo_sapiens 0 407
ENST00000548598 RACGAP1-031 nonsense_mediated_decay Homo_sapiens 0 374
ENST00000549342 RACGAP1-018 protein_coding Homo_sapiens 0 252
ENST00000550149 RACGAP1-021 protein_coding Homo_sapiens 2e-33 147
ENST00000550663 RACGAP1P-001 processed_pseudogene Homo_sapiens 0 477
ENST00000551016 RACGAP1-002 protein_coding Homo_sapiens 0 597
ENST00000552310 RACGAP1-024 protein_coding Homo_sapiens 0 318

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