C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retrotransposon gag domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165829 Rgag1-001 ENSMUSG00000085584 10090 + X:143099594-143104297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165829
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165829 0.224±0.06 0.088±0.04 0.233±0.00 0.115±0.05 0.061±0.04 0.058±0.03 0.017±0.01 0.009±0.00 0.134±0.04 0.041±0.01 0.156±0.08 0.053±0.02 0.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079X CIL_00079X_0002 CGP X:142851146-143104297
CIL_00079W CIL_00079W_0002 CGP X:143099594-143394262

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000465301 RGAG1-001 protein_coding Homo_sapiens 0 1471
ENST00000540313 RGAG1-201 protein_coding Homo_sapiens 0 1471

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