C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: negative elongation factor complex member E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375429 NELFE-001 ENSG00000204356 9606 - 6:31952087-31959110 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungOvaryPlacentaENST00000375429
Transcript ID Liver Lung Ovary Placenta
ENST00000375429 2.091±0.00 1.061±0.00 17.884±10.69 22.984±8.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0008150 ND biological_process
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0032021 IDA NELF complex
GO:0034244 IEA negative regulation of transcription elongation from RNA polymerase II promoter
GO:0044822 IDA poly(A) RNA binding
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165953 Nelfe-002 protein_coding Mus_musculus 0 1459
ENSMUST00000097343 Nelfe-201 protein_coding Mus_musculus 0 1428
ENSMUST00000173357 Nelfe-001 protein_coding Mus_musculus 0 1360
ENSMUST00000173065 Nelfe-003 protein_coding Mus_musculus 0 752
ENSMUST00000174888 Nelfe-006 retained_intron Mus_musculus 0 348
ENSMUST00000174075 Nelfe-004 retained_intron Mus_musculus 0 217
ENSMUST00000173775 Nelfe-005 retained_intron Mus_musculus 4e-39 167

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