C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: negative elongation factor complex member E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000444811 NELFE-012 ENSG00000204356 9606 - 6:31952229-31958960 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000444811
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000444811 14.827±0.00 24.184±0.00 19.768±0.00 16.634±0.00 15.710±0.00 12.547±0.00 14.249±0.00 5.707±0.00 32.988±0.00 12.816±11.20 25.877±1.63 21.358±1.46 52.634±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0008150 ND biological_process
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0032021 IDA NELF complex
GO:0044822 IDA poly(A) RNA binding
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097343 Nelfe-201 protein_coding Mus_musculus 0 726
ENSMUST00000165953 Nelfe-002 protein_coding Mus_musculus 0 726
ENSMUST00000173357 Nelfe-001 protein_coding Mus_musculus 0 726
ENSMUST00000173065 Nelfe-003 protein_coding Mus_musculus 0 534
ENSMUST00000174888 Nelfe-006 retained_intron Mus_musculus 0 348
ENSMUST00000174075 Nelfe-004 retained_intron Mus_musculus 0 217
ENSMUST00000173775 Nelfe-005 retained_intron Mus_musculus 3e-39 167

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