C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier organic anion transporter family, member 1a4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165990 Slco1a4-001 ENSMUSG00000030237 10090 - 6:141805440-141856171 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000165990
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000165990 0.832±0.00 0.043±0.00 0.070±0.01 0.141±0.05 0.003±0.00 0.079±0.00 0.018±0.01 0.232±0.00 0.016±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0006820 IDA anion transport
GO:0008514 IDA organic anion transmembrane transporter activity
GO:0015125 IEA bile acid transmembrane transporter activity
GO:0015721 IEA bile acid and bile salt transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0043252 IEA sodium-independent organic anion transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307378 SLCO1A2-001 protein_coding Homo_sapiens 0 1325
ENST00000458504 SLCO1A2-002 protein_coding Homo_sapiens 0 1029
ENST00000463718 SLCO1A2-003 retained_intron Homo_sapiens 0 1164
ENST00000480394 SLCO1A2-004 retained_intron Homo_sapiens 0 946
ENST00000544020 SLCO1A2-016 nonsense_mediated_decay Homo_sapiens 0 1027
ENST00000544290 SLCO1A2-017 nonsense_mediated_decay Homo_sapiens 0 1027

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