C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier organic anion transporter family, member 1A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307378 SLCO1A2-001 ENSG00000084453 9606 - 12:21264600-21395437 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartKidneyLiverOvaryPlacentaTestisENST00000307378
Transcript ID Bladder Heart Kidney Liver Ovary Placenta Testis
ENST00000307378 0.055±0.00 0.004±0.00 0.438±0.00 0.040±0.00 0.012±0.00 0.026±0.01 0.034±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PW CIL_0005PW_0001 CGP 12:21131202-21419594
CIL_0005PZ CIL_0005PZ_0001 CGP 12:21264600-21419594

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0008206 TAS bile acid metabolic process
GO:0008514 TAS organic anion transmembrane transporter activity
GO:0015711 TAS organic anion transport
GO:0015721 TAS bile acid and bile salt transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0043252 TAS sodium-independent organic anion transport
GO:0044281 TAS small molecule metabolic process
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081380 Slco1a5-001 protein_coding Mus_musculus 0 1328
ENSMUST00000111825 Slco1a5-002 protein_coding Mus_musculus 0 1328
ENSMUST00000165990 Slco1a4-001 protein_coding Mus_musculus 0 1325
ENSMUST00000032364 Slco1a4-201 protein_coding Mus_musculus 0 1312
ENSMUST00000042119 Slco1a1-001 protein_coding Mus_musculus 0 1192
ENSMUST00000168119 Slco1a1-002 protein_coding Mus_musculus 0 1129
ENSMUST00000181628 Gm6614-002 protein_coding Mus_musculus 0 1061
ENSMUST00000181791 Gm6614-001 protein_coding Mus_musculus 0 1024
ENSMUST00000111832 Gm6614-201 protein_coding Mus_musculus 0 1022
ENSMUST00000111822 Slco1a5-003 retained_intron Mus_musculus 0 992
ENSMUST00000171651 Slco1a1-003 retained_intron Mus_musculus 0 693
ENSMUST00000128446 Slco1a5-005 protein_coding Mus_musculus 0 501

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