C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of defective silencing 3 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166397 Suds3-202 ENSMUSG00000066900 10090 - 5:117091682-117115993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000166397
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000166397 4.133±0.40 10.070±3.27 3.729±0.00 47.102±0.00 3.676±0.70 9.803±2.55 2.570±0.51 9.048±2.42 8.624±4.51 3.948±0.82 6.870±1.81 20.976±10.35 22.560±15.53 21.702±15.55

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0004407 ISS histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0016575 ISS histone deacetylation
GO:0016580 IDA Sin3 complex
GO:0019899 IEA enzyme binding
GO:0021762 IEA substantia nigra development
GO:0042802 IPI identical protein binding
GO:0042803 IPI protein homodimerization activity
GO:0042826 IDA histone deacetylase binding
GO:0043065 ISS positive regulation of apoptotic process
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111646 suds3-001 protein_coding Danio_rerio 0 584
ENSDART00000114446 suds3-201 protein_coding Danio_rerio 0 490
ENST00000505831 SUDS3P1-001 processed_pseudogene Homo_sapiens 0 990
ENST00000541280 SUDS3-003 processed_transcript Homo_sapiens 0 320
ENST00000541591 SUDS3-002 processed_transcript Homo_sapiens 0 372
ENST00000543473 SUDS3-001 protein_coding Homo_sapiens 0 1146
ENST00000617540 AC114936.1-201 processed_pseudogene Homo_sapiens 0 586

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