C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 258
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166412 Tmem258-201 ENSMUSG00000036372 10090 + 19:10206033-10207824 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastMuscleOvaryPlacentaENSMUST00000166412
Transcript ID Breast Muscle Ovary Placenta
ENSMUST00000166412 44.787±0.00 12.381±0.82 138.930±0.00 195.255±17.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0002 VISTA 19:10121785-10724671
CIL_000057 CIL_000057_0002 CGP 19:10204014-10240748

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257262 TMEM258-005 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000445629 AC104389.32-001 processed_pseudogene Homo_sapiens 0 246
ENST00000535042 TMEM258-008 processed_transcript Homo_sapiens 0 333
ENST00000537328 TMEM258-001 protein_coding Homo_sapiens 0 385
ENST00000541893 TMEM258-006 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000543510 TMEM258-007 protein_coding Homo_sapiens 0 387
ENST00000545210 TMEM258-004 nonsense_mediated_decay Homo_sapiens 0 246

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