C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rab geranylgeranyl transferase, b subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167111 Rabggtb-202 ENSMUSG00000038975 10090 - 3:153907289-153912203 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverLungOvaryPlacentaTestisENSMUST00000167111
Transcript ID Adrenal Breast Liver Lung Ovary Placenta Testis
ENSMUST00000167111 2.305±0.00 3.221±0.00 7.036±3.12 1.967±0.00 4.319±0.72 6.625±5.19 0.581±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZQ CIL_0002ZQ_0002 CGP 3:153907289-153944632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004663 ISS Rab geranylgeranyltransferase activity
GO:0005515 IEA protein binding
GO:0005968 ISS Rab-protein geranylgeranyltransferase complex
GO:0008270 ISS zinc ion binding
GO:0017137 ISS Rab GTPase binding
GO:0018344 ISS protein geranylgeranylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319942 RABGGTB-001 protein_coding Homo_sapiens 0 1103
ENST00000370826 RABGGTB-012 protein_coding Homo_sapiens 0 399
ENST00000461653 RABGGTB-006 processed_transcript Homo_sapiens 0 296
ENST00000462042 RABGGTB-011 processed_transcript Homo_sapiens 0 344
ENST00000462549 RP11-553D4.2-001 processed_pseudogene Homo_sapiens 0 279
ENST00000467748 RABGGTB-009 processed_transcript Homo_sapiens 0 222
ENST00000470201 RABGGTB-013 processed_transcript Homo_sapiens 0 734
ENST00000471759 RABGGTB-002 processed_transcript Homo_sapiens 0 710
ENST00000473406 RABGGTB-004 processed_transcript Homo_sapiens 0 621
ENST00000485459 RABGGTB-007 processed_transcript Homo_sapiens 0 300
ENST00000489450 RABGGTB-008 processed_transcript Homo_sapiens 0 279
ENST00000491266 RABGGTB-014 processed_transcript Homo_sapiens 0 741
ENST00000496055 RABGGTB-003 processed_transcript Homo_sapiens 0 710
ENST00000497648 RABGGTB-005 processed_transcript Homo_sapiens 1e-23 115

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